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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTAGTGGTGGATCCGGTCATGGTGTCCACCAGCGGTGATACTCTTTCAGGACCATCTACTCTCGCTACATATAGgtacaagatcaatgtttgttttgttccgtatgcatttgagttcttgttggattgtattgctgtttcattgtcaatactgtagtacttatggacatgatcttgcaattgttatgagcag

Basic information

species Zea mays
transcript GRMZM2G401934_T04
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G401934_T04 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os12g09000.1 (Oryza sativa), 5'ss of exon 4
CTCTAGTGGTGGATCCGGTCATGGTGTCCACCAGCGGTGATACTCTTTCAGGACCATCTACTCTCGCTACATATAGgtacaagatcaatgtttgttttgttccgtatgcatttgagttcttgttggattgtattgctgtttcattgtcaatactgtagtacttatggacatgatcttgcaattgttatgagcag
|| ||||||||||||| || ||||||||||| || || ||||||||||||| | ||||||||||| ||  ||||||||||| |||  || |||| ||||||   | || ||||    |    |  | ||| | ||||                  ||  | |||  |  ||  |    || ||||| || ||||
CTTTAGTGGTGGATCCAGTTATGGTGTCCACAAGTGGAGATACTCTTTCAGAATCATCTACTCTCTCTGTATATAGgtacaggattcatatttggtttgttttatttgtattta---taacatccggttggaatgct---------------tcataaaatttagtgtaatagtgcaacatttgttttgtgcag

upper sequence: GRMZM2G401934_T04 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os12g09000.2 (Oryza sativa), 5'ss of exon 4
----CTCTAGTGGTGGATCCGGTCATGGTGTCCACCAGCGGTGATACTCTTTCAGGACCATCTACTCTCGCTACATATAGgtacaagatcaatgtttgttttgttccgtatgcatttgagttcttgttggattgtattgctgtttcattgtcaatactgtagtacttatggacatgatcttgcaattgttatgagcag
    || ||||||||||||| || ||||||||||| || || ||||||||||||| | ||||||||||| ||  ||||||||||| |||  || |||| ||||||   | || ||||    |    |  | ||| | ||||                  ||  | |||  |  ||  |    || ||||| || ||||
GCAGCTTTAGTGGTGGATCCAGTTATGGTGTCCACAAGTGGAGATACTCTTTCAGAATCATCTACTCTCTCTGTATATAGgtacaggattcatatttggtttgttttatttgtattta---taacatccggttggaatgct---------------tcataaaatttagtgtaatagtgcaacatttgttttgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211204885|gb|FL411800.1|FL411800
EST:     TCCACCAGCGGTGATACTCTTTCAGGACCATCTACTCTCGCTACATATAG                         GGATGAACTATTTTCTATGGCTGATATAGTCACTCC-AAATGTGAAAGAAG
genomic: TCCACCAGCGGTGATACTCTTTCAGGACCATCTACTCTCGCTACATATAGgtacaagatc ... ttatgagcagGGATGAACTATTTTCTATGGCTGATATAGTCACTCCCAAATGTGAAAGAAG
EST: gi|211420915|gb|FL387494.1|FL387494
EST:     TCCACCAGCGGTGATACTCTTTCAGGACCATCTACTCTCGCTACATATAG                         GGATGAACTATTTTCTATGGCTGATATAGTCACTCC-AAATGTGAAAGAAG
genomic: TCCACCAGCGGTGATACTCTTTCAGGACCATCTACTCTCGCTACATATAGgtacaagatc ... ttatgagcagGGATGAACTATTTTCTATGGCTGATATAGTCACTCCCAAATGTGAAAGAAG
EST: gi|211080316|gb|FL423993.1|FL423993
EST:     TCCACCAGCGGTGATACTCTTTCAGGACCATCTACTCTCGCTACATATAG                         GGATGAACTATTTTCTATGGNTGATATAGTCACTCC-AAATGTGAAAGAAG
genomic: TCCACCAGCGGTGATACTCTTTCAGGACCATCTACTCTCGCTACATATAGgtacaagatc ... ttatgagcagGGATGAACTATTTTCTATGGCTGATATAGTCACTCCCAAATGTGAAAGAAG
EST: gi|71430480|gb|DR811530.1|DR811530
EST:     TCCACCAGCGGTGATACTCTTTCAGGACCATCTACTCTCGCTACATATAG                         GGATGAACTATTTTCTATGGCTGATATAGTCACT-CCAAATGTGAAAGAAG
genomic: TCCACCAGCGGTGATACTCTTTCAGGACCATCTACTCTCGCTACATATAGgtacaagatc ... ttatgagcagGGATGAACTATTTTCTATGGCTGATATAGTCACTCCCAAATGTGAAAGAAG