1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCGGCTATGACAGGGAGGAGAAGGCTGCGAGGGCTTATGACCTGGCAGCTCTCAAGTACTGGGGCCCCTCGACTCACATAAATTTCCCGgtacgtttactgatggctcccttcgtccccttctcacggcgaccttaatttactactaactccatgcatgaaattaagaaaaagggccctgtagctcaac...
species | Zea mays |
transcript | GRMZM2G399072_T03 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACCTGGCAGCTCTCAAGTACTGGGGCCCCTCGACTCACATAAATTTCCCG CTGAGCCACTACGAGAAGGAGCTGGAGGAGATGAAGCACATGTCGAGGCAGEST: gi|78075185|gb|DV503619.1|DV503619
genomic: ACCTGGCAGCTCTCAAGTACTGGGGCCCCTCGACTCACATAAATTTCCCGgtacgtttac ... atgcccgtagCTGAGCCACTACGAGAAGGAGCTGGAGGAGATGAAGCACATGTCGAGGCAG
EST: CCTGGCAGCTCTCAAGTACTGGGGCCCCTCGACTCACATAAATTTTCCCG CTGAGCCACTACGAGAAGGAGCTGGAGGAGATGAAGCACATGTCGAGGCAEST: gi|33467735|gb|CF244784.1|CF244784
genomic: CCTGGCAGCTCTCAAGTACTGGGGCCCCTCGACTCACATAAA-TTTCCCGgtacgtttac ... atgcccgtagCTGAGCCACTACGAGAAGGAGCTGGAGGAGATGAAGCACATGTCGAGGCA
EST: ACCTGGCAGCTCTCAAGTACTGGGGCCCCTCGACTCACATAAATTTCCCG CTGAGCCACTACGAGAAGGAGCTGGAGGAGATGAAGCACATGTCGAGGCAGEST: gi|148974703|gb|EE025512.2|EE025512
genomic: ACCTGGCAGCTCTCAAGTACTGGGGCCCCTCGACTCACATAAATTTCCCGgtacgtttac ... atgcccgtagCTGAGCCACTACGAGAAGGAGCTGGAGGAGATGAAGCACATGTCGAGGCAG
EST: ACCTGGCAGCTCTCAAGTACTGGGGCCCCTCGACTCACATAAATTTCCCG CTGAGCCACTACGAGAAGGAGCTGGAGGAGATGAAGCACATGTCGAGGCAG
genomic: ACCTGGCAGCTCTCAAGTACTGGGGCCCCTCGACTCACATAAATTTCCCGgtacgtttac ... atgcccgtagCTGAGCCACTACGAGAAGGAGCTGGAGGAGATGAAGCACATGTCGAGGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGGCTATGACAGGGAGGAGAAGGCTGCGAGGGCTTATGACCTGGCAGCTCTCAAGTACTGGGGCCCCTCGACTCACATAAATTTCCCGgtacgtttactgatggctcccttcgtccccttctcacggcgaccttaatttactactaactccatgcatgaaattaagaaaaagggccctgtagctcaac
- - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctccctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaaa