Sequence
atgc intronic sequence ATGC exonic sequenceACCTCCGATCTAAATAATGCCCGTAGCTGAGCCACTACGAGAAGGAGCTGGAGGAGATGAAGCACATGTCGAGGCAGGAGTTCATTGCACACCTGAGAAGgtactgcatgatagcagttcttatttacaccgcatgcatgctgcactaagagtttatgtgcatgggaacaaacacaattgcattacagcgtactgctgct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G399072_T02 (Zea mays), 5'ss of exon 4
lower sequence: PP1S131_131V6.1 (Physcomitrella patens), 5'ss of exon 5
ACCTCCGATCTAAATAATGCCCGTAGCTGAGCCACTACGAGAAGGAGCTGGAGGAGATGAAGCACATGTCGAGGCAGGAGTTCATTGCACACCTGAGAAGgtactgcatgatagcagtt-cttatttacaccg-catgcatgctgcactaagagtttatgtgcatgggaacaaacacaattgcattacagcgtactgctgct
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-------------------------CTTGATACA-TACGAACAAGAGCTGGAGGAGATGAAGAACATGTCTCGGCAGGAGTATGTTGCCTCGTTGAGAAGgtgcaatccttgaggagtttcctgataacatagtcgaggttgatatagttgtgatttgtgtccacaagggt--tttgagttcagggacagactgtgagagat
upper sequence: GRMZM2G399072_T02 (Zea mays), 5'ss of exon 4
lower sequence: PP1S66_282V6.1 (Physcomitrella patens), 5'ss of exon 5
ACCTCCGATCTAAATAATGCCCGTAGCTGAGCCACTACGAGAAGGAGCTGGAGGAGATGAAGCACATGTCGAGGCAGGAGTTCATTGCACACCTGAGAAGgtactgcatga-----tagcagttcttatttacaccgcatgcatgctgcactaagagtttatgtgcatgggaacaaacacaattgcattacagcgtactgctgct
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--------------------------TTGAGTACGTATGAGGCGGAGCTGGAGGAGATGAAGAACATGTCTCGGCAGGAGTATGTGGCGTCGTTGAGAAGgtaaagagtggggaggttgtgatggtgagtgtgagtgtgaatgtgcgttggtgcgggtgta-gggtccagaaatagatgaggagagattgtgggacgcggg----
upper sequence: GRMZM2G399072_T02 (Zea mays), 5'ss of exon 4
lower sequence: PP1S131_139V6.1 (Physcomitrella patens), 5'ss of exon 4
ACCTCCGATCTAAATAATGCCCGTAGCTGAGCCACTACGAGAAGGAGCTGGAGGAGATGAAGCACATGTCGAGGCAGGAGTTCATTGCACACCTGAGAAGgtactgcatgatagcagt-tcttatttacaccgc-atgcatgctgcactaagagtttatgtgcatgggaacaaacacaattgcattacagcgtactgctgct
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--------------------------CTTGGTACATATGAAAAAGAGCTGGAGGAGATGAAGAACATGTCTCGGCAGGAGTATGTGGCCTCGTTGAGGAGgtacaatcctccaaaaatctcctgatagtatggttgcggtcgacgtggtcgtgatattcgtccacaagggttttcatcagtaca--gagacagactgtgagaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|149106354|gb|EE292071.2|EE292071EST: GAGGAGATGAAGCACATGTCGAGGCAGGAGTTCATTGCACACCTGAGAAG GCATCACCAGCACGGGAGATGGCAGGCCAGGATTGGGAGGGTCGCTGGCAA
genomic: GAGGAGATGAAGCACATGTCGAGGCAGGAGTTCATTGCACACCTGAGAAGgtactgcatg ... acgtttgcagGCATCACCAGCACGGGAGATGGCAGGCCAGGATTGGGAGGGTCGCTGGCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACCTCCGATCTAAATAATGCCCGTAGCTGAGCCACTACGAGAAGGAGCTGGAGGAGATGAAGCACATGTCGAGGCAGGAGTTCATTGCACACCTGAGAAGgtactgcatgatagcagttcttatttacaccgcatgcatgctgcactaagagtttatgtgcatgggaacaaacacaattgcattacagcgtactgctgct
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC