1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TAAGCTACTTGGAGGTGGTTTGCACAATTCTTCTGTGGTCCGTGGGATGGTTCTGAAAAATGATGCTGTTGGTAGCATCAAAAGGGCGGAGAAGGCAAAGgtacgctaaaaatgctacttttcattcacatttcacactggttatacctgtcaaagttctatgcccttcttttctattgactttgaagttctttaaatga...
species | Zea mays |
transcript | GRMZM2G381744_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTCTGAAAAATGATGCTGTTGGTAGCATCAAAAGGGCGGAGAAGGCAAAG ATTGTCGTATTTGCTGGTGGTGTCGACACCTCGGCAACTGAAACAAAGGGAEST: gi|22491636|gb|BU051559.1|BU051559
genomic: TTCTGAAAAATGATGCTGTTGGTAGCATCAAAAGGGCGGAGAAGGCAAAGgtacgctaaa ... caatattcagATTGTCGTATTTGCTGGTGGTGTCGACACCTCGGCAACTGAAACAAAGGGA
EST: TTCTGAAAAATGATGCTGTTGGTAGCATCAAAAGGGCGGAGAAAGCCAAG GTTGGTTCGTATTTGCTGGTGGTGTCGACACCTCGGCAACTGAAACAAAGGEST: gi|87153402|gb|DY398191.1|DY398191
genomic: TTCTGAAAAATGATGCTGTTGGTAGCATCAAAAGGGCGGAGAAGGCAAAGgtacgctaaa ... caatattcagATTG-T-CGTATTTGCTGGTGGTGTCGACACCTCGGCAACTGAAACAAAGG
EST: TTCTGAAAAATGATGCTGTTGGTAGCATCAAAAGGGCGGAGAAGGCAAAG ATTGTCGTATTTGCTGGTGGTGTCGACACCTCGGCAACTGAAACAAAGGGA
genomic: TTCTGAAAAATGATGCTGTTGGTAGCATCAAAAGGGCGGAGAAGGCAAAGgtacgctaaa ... caatattcagATTGTCGTATTTGCTGGTGGTGTCGACACCTCGGCAACTGAAACAAAGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAGCTACTTGGAGGTGGTTTGCACAATTCTTCTGTGGTCCGTGGGATGGTTCTGAAAAATGATGCTGTTGGTAGCATCAAAAGGGCGGAGAAGGCAAAGgtacgctaaaaatgctacttttcattcacatttcacactggttatacctgtcaaagttctatgcccttcttttctattgactttgaagttctttaaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG