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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTTCCTGAGAAGAAGTTTGAATGGGTAAgtaatcatgccattgcatgcgcattgtagttcatgtttctttctgatactgatgtttggatgctgtttctggtgctacctctgcatggaaatctgaatat...

Basic information

species Zea mays
transcript GRMZM2G376727_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G376727_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g01307.1 (Oryza sativa), 5'ss of exon 4
GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTTCCTGAGAAGAAGTTTGAATGGGTAAgtaatcatgccattgcatgcgcattgtagttcatgtttctttctgatactgatgtttggatgctgtttctggtgctacct----ctgcatg-gaaatctgaatat-------------------
|||||||| ||||| |||||| |  |||| ||| |||| |||||||| | ||| || ||||||||||||||||||||||||  ||||||||||||  |||| ||||   | |  || | |||| || ||||   |||||||||| || | ||  |     | |  |  ||| |||  || |                   
GAGGCCTATTCAACCCCCATCCTTGCACTTGATGTTCTTGCTGAGAGGCCTCCAGAAAAGAAGTTTGAATGGgtaagtaattgtgccattgcatgtacattctagtctgtttcgctctatgatcctaatgtgctgatgctgtttatgtttctggcatgcgccgtgtatgaattcttgatgttctctccttgttggttcag

upper sequence: GRMZM2G376727_T03 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA16G05530.2 (Glycine max), 5'ss of exon 4
GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTTCCTGAGAAGAAGTTTGAATGGGTAAgtaatc--atgccattgcatgcgcattgta---gttcatgtttctttctgatactgatgtttggatgctgtttctggtgctacctctgcatggaaatctgaatat
||||| || ||||||||||| || ||  ||||  ||||  |||| |||| ||||||||||||||||||||||||| ||   |  || |  |  | ||    ||  |    |   | |   || || ||  |||   | | ||| |  || | ||  |         |       || |   
GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGGTATgtttccttatactttaacttgacagttacatgaatcagtatcaattgcttatgttgac--tggcatgttactttttgttttcatgtattctacttggttgga---

upper sequence: GRMZM2G376727_T03 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA19G27250.1 (Glycine max), 5'ss of exon 4
GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTTCCTGAGAAGAAGTTTGAATGGGTAAgtaatc---atgccattgcatgcgcattgta---gttcatgtttctt--tctgatactgatgtttggatgctgtttctggtgctac---ctctgcatgga--aatctgaatat-----
||||| || ||||||||||| || ||  ||||| ||||  |||| |||| ||| |||||||||||||||||||||  |   |   || |     | ||    ||  |    |  || |   ||  | | ||  |||       ||    ||| || |   |     ||| | |||    | |||| |||     
GAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCTCCCGAGAAGAAGTTTGAATGGgtatatttcctgtatacttgaacttgacagttacatgaatcaatatcaattgcttttatgttgactgacatatttactttttgttttcatgtattctacttggtttgacctga-tatctcag

upper sequence: GRMZM2G376727_T03 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA19G27250.2 (Glycine max), 5'ss of exon 3
----------------------------GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTTCCTGAGAAGAAGTTTGAATGGGTAAgtaatc---atgccattgcatgcgcattgta---gttcatgtttctt--tctgatactgatgtttggatgctgtttctggtgctac---ctctgcatgga--aatctgaatat-----
                            ||||| || ||||||||||| || ||  ||||| ||||  |||| |||| ||| |||||||||||||||||||||  |   |   || |     | ||    ||  |    |  || |   ||  | | ||  |||       ||    ||| || |   |     ||| | |||    | |||| |||     
TTATTGTAGTAGTTTTTTTCCCTATTAGGAGGCATATTCAACTCCCATATTGCCTTTGGATGTTCTTTCTGATAGACCTCCCGAGAAGAAGTTTGAATGGgtatatttcctgtatacttgaacttgacagttacatgaatcaatatcaattgcttttatgttgactgacatatttactttttgttttcatgtattctacttggtttgacctga-tatctcag

upper sequence: GRMZM2G376727_T03 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA16G05530.1 (Glycine max), 5'ss of exon 4
GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTTCCTGAGAAGAAGTTTGAATGGGTAAgtaatc--atgccattgcatgcgcattgta---gttcatgtttctttctgatactga-tgtttggatgctgtttctggtgctac-ctctgcatggaaatctgaatat-----
||||| || ||||||||||| || ||  ||||  ||||  |||| |||| ||||||||||||||||||||||||| ||   |  || |  |  | ||    ||  |    |   | |   || || ||  ||| ||    | | || ||| |  |  |    ||| | |||        | ||     
GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttccttatactttaacttgacagttacatgaatcagtatcaattgcttatgttgactggcatgttactttttgttttcatgtattctacttggttggaccgacatctcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5006027|gb|AI712089.1|AI712089
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCCCTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|5006027|gb|AI712089.1|AI712089
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCCCTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|15590113|gb|BI674729.1|BI674729
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTG
EST: gi|15590113|gb|BI674729.1|BI674729
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTG
EST: gi|31611983|gb|CD568605.1|CD568605
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|31611983|gb|CD568605.1|CD568605
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|7135675|gb|AW498208.1|AW498208
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|7135675|gb|AW498208.1|AW498208
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|15590464|gb|BI675080.1|BI675080
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|15590464|gb|BI675080.1|BI675080
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|15545702|gb|BI643496.1|BI643496
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|15545702|gb|BI643496.1|BI643496
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|8930280|gb|BE225044.1|BE225044
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|8930280|gb|BE225044.1|BE225044
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|76285099|gb|DV024667.1|DV024667
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|76285099|gb|DV024667.1|DV024667
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|9255123|gb|BE345591.1|BE345591
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|9255123|gb|BE345591.1|BE345591
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|15053451|gb|BI358996.1|BI358996
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|15053451|gb|BI358996.1|BI358996
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|60347158|gb|DN214131.1|DN214131
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|60347158|gb|DN214131.1|DN214131
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|15590463|gb|BI675079.1|BI675079
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCCTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|15590463|gb|BI675079.1|BI675079
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCCTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|7137614|gb|AW499182.1|AW499182
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|7137614|gb|AW499182.1|AW499182
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|78080233|gb|DV508645.1|DV508645
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|78080233|gb|DV508645.1|DV508645
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|37383348|gb|CF628683.1|CF628683
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|37383348|gb|CF628683.1|CF628683
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|37377085|gb|CF625114.1|CF625114
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|37377085|gb|CF625114.1|CF625114
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|149106143|gb|EE291820.2|EE291820
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|149106143|gb|EE291820.2|EE291820
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|60346405|gb|DN213378.1|DN213378
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|60346405|gb|DN213378.1|DN213378
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|60355754|gb|DN222727.1|DN222727
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|60355754|gb|DN222727.1|DN222727
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|89249519|gb|DY621305.1|DY621305
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|89249519|gb|DY621305.1|DY621305
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|30706031|gb|CD059006.1|CD059006
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|30706031|gb|CD059006.1|CD059006
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|78107599|gb|DV526017.1|DV526017
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|78107599|gb|DV526017.1|DV526017
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|60354184|gb|DN221157.1|DN221157
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|60354184|gb|DN221157.1|DN221157
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|211379488|gb|FL165247.1|FL165247
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|211379488|gb|FL165247.1|FL165247
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|15215431|gb|BI431279.1|BI431279
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|15215431|gb|BI431279.1|BI431279
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|32829808|gb|CD969486.1|CD969486
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|32829808|gb|CD969486.1|CD969486
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|38671702|gb|CD219303.2|CD219303
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|38671702|gb|CD219303.2|CD219303
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|21987232|gb|BQ778760.1|BQ778760
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|21987232|gb|BQ778760.1|BQ778760
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|32828788|gb|CD968466.1|CD968466
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|32828788|gb|CD968466.1|CD968466
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|211340832|gb|FL479597.1|FL479597
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|211340832|gb|FL479597.1|FL479597
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|24769483|gb|CA404612.1|CA404612
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|24769483|gb|CA404612.1|CA404612
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|78081691|gb|DV510103.1|DV510103
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|78081691|gb|DV510103.1|DV510103
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|87156435|gb|DY401224.1|DY401224
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|87156435|gb|DY401224.1|DY401224
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|60356569|gb|DN223542.1|DN223542
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|60356569|gb|DN223542.1|DN223542
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|74243940|gb|DT651854.1|DT651854
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|74243940|gb|DT651854.1|DT651854
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|211354953|gb|FL243593.1|FL243593
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|211354953|gb|FL243593.1|FL243593
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|16919381|gb|BM074163.1|BM074163
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|16919381|gb|BM074163.1|BM074163
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|24765720|gb|CA400879.1|CA400879
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|24765720|gb|CA400879.1|CA400879
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|60347341|gb|DN214314.1|DN214314
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|60347341|gb|DN214314.1|DN214314
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|211130310|gb|FL066377.1|FL066377
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|211130310|gb|FL066377.1|FL066377
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|211130311|gb|FL066378.1|FL066378
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
EST: gi|211130311|gb|FL066378.1|FL066378
EST:     TGAGAAGAAGTTTGAATGGGCTAAG                         AGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG
genomic: TGAGAAGAAGTTTGAATGGG-TAA-gtaatcatgc ... ccatgtgcagAGGCTTGTGGCGAAATATGGGTCACTTGTGTCTGTTGTCTCATTTGTTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTTCCTGAGAAGAAGTTTGAATGGGTAAgtaatcatgccattgcatgcgcattgtagttcatgtttctttctgatactgatgtttggatgctgtttctggtgctacctctgcatggaaatctgaatat

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctacctc