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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGTTCCTGAATTAAGGCACTATGCTCCTGGCGTGCCCATAATCCTTGTTGGGACAAAACTTGgtatgctcttcattcttcacctctatctgcagcatattatgttcctccagaattggcctttcattctcattcgttgccagttacattgccaaaattatct...

Basic information

species Zea mays
transcript GRMZM2G375002_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G375002_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g58730.2 (Oryza sativa), 5'ss of exon 4
TGGGTTCCTGAATTAAGGCACTATGCTCCTGGCGTGCCCATAATCCTTGTTGGGACAAAACTTGgtatgctcttc--attcttcacctctatc-----tgcagcatattatgttcctccagaattggcctttcattctcattcgttgccagttacattgccaaaattatct
||| | |||||||||||||| ||||||||||| ||||| ||||| || ||||| ||||| |||||||||| ||||  | ||||      || |     ||||    || |  |  ||  ||||||   || | ||  |  |||  | ||| ||||     ||   |     
TGGATACCTGAATTAAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgcccttccaactcttgttgcatagcatttgtgcaaagcatcacatatctgtagaattaagctattatatt--ttcactcccacttac--cagcagcttgg---

upper sequence: GRMZM2G375002_T03 (Zea mays), 5'ss of exon 4
lower sequence: AT4G35020.3 (Arabidopsis thaliana), 5'ss of exon 6
TGGGTTCCTGAATTAAGGCACTATGCTCCTGGCGTGCCCATAATCCTTGTTGGGACAAAACTTGgtatgctcttcattc-ttcacctct--atctgcagcatattatgttcctccagaattggcctttcattctcattcgttgccagttacattgccaaaattatct
|||||||||||| | || || ||||||||||| || ||||| ||||| ||||| ||||| ||||||  | | ||  ||   ||| ||||  |||  | |  |||   |    | | |  ||||       |||| ||   |||     |   |  |  | |      
TGGGTTCCTGAACTGAGACATTATGCTCCTGGTGTTCCCATCATCCTCGTTGGAACAAAGCTTGgttggttttttcttagctcaactcttaatcgcctgattatcgggggttttctgttttggggaactcttctgatattttgatgactgagtctcgtacag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211385329|gb|FL304291.1|FL304291
EST:     AAGGCACTATGCTCCTGGCGTGCCCATAATCCTTGTTGGGACAAAACTTG                         CCACGATAGGGTTCTGGATTCTGGAAATA
genomic: AAGGCACTATGCTCCTGGCGTGCCCATAATCCTTGTTGGGACAAAACTTGgtatgctctt ... acttatgcagCCACGATAGGGTTCTGGATTCTGGAAATA