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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGATATAATCTGCAACAAGgtcaccaccccaaccgatttgcgctgtttgatgagttgttcaaaactacactctgccacttttgattttttttccag

Basic information

species Zea mays
transcript GRMZM2G374779_T03
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211340859|gb|FL372915.1|FL372915
EST:     ACAGGCTGATATAATCTGCAACAAG                         GTCAAGGAAATGAAACAACTGAGAGGTGGCTACAACATAGTTGGTCTGTCT
genomic: ACAGGCTGATATAATCTGCAACAAGgtcaccaccc ... ttttttccagGTCAAGGAAATGAAACAACTGAGAGGTGGCTACAACATAGTTGGTCTGTCT
EST: gi|211357926|gb|FL387018.1|FL387018
EST:     ACAGGCTGATATAATCTGCAACAAG                         GTCAAGGAAATGAAACAACTGAGAGGTGGCTACAACATAGTTGGTCTGTCT
genomic: ACAGGCTGATATAATCTGCAACAAGgtcaccaccc ... ttttttccagGTCAAGGAAATGAAACAACTGAGAGGTGGCTACAACATAGTTGGTCTGTCT
EST: gi|211458917|gb|FL402420.1|FL402420
EST:     ACAGGCTGATATAATCTGCAACAAG                         GTCAAGGAAATGAAACAACTGAGAGGTGGCTACAACATAGTTGGTCTGTCT
genomic: ACAGGCTGATATAATCTGCAACAAGgtcaccaccc ... ttttttccagGTCAAGGAAATGAAACAACTGAGAGGTGGCTACAACATAGTTGGTCTGTCT
EST: gi|211319230|gb|FL384888.1|FL384888
EST:     ACAGGCTGATATAATCTGCAACAAG                         GTCAAGGAAATGAAACAACTGAGAGGTGGCTACAACATAGTTGGTCTGTCT
genomic: ACAGGCTGATATAATCTGCAACAAGgtcaccaccc ... ttttttccagGTCAAGGAAATGAAACAACTGAGAGGTGGCTACAACATAGTTGGTCTGTCT
EST: gi|101397865|gb|EB820809.1|EB820809
EST:     ACAGGCTGATATAATCTGCAACAAG                         GTCAAGGAAATGAAACAACTGAGAGGTGGCTACAACATAGTTGGTCTGTCT
genomic: ACAGGCTGATATAATCTGCAACAAGgtcaccaccc ... ttttttccagGTCAAGGAAATGAAACAACTGAGAGGTGGCTACAACATAGTTGGTCTGTCT
EST: gi|211298857|gb|FL392428.1|FL392428
EST:     ACAGGCTGATATAATCTGCAACAAG                         GTCAAGGAAATGAAACAACTGAGAGGTGGCTACAACATAGTTGGTCTGTCT
genomic: ACAGGCTGATATAATCTGCAACAAGgtcaccaccc ... ttttttccagGTCAAGGAAATGAAACAACTGAGAGGTGGCTACAACATAGTTGGTCTGTCT
EST: gi|211158456|gb|FL415219.1|FL415219
EST:     ACAGGCTGATATAATCTGCAACAAG                         GTCAAGGAAATGAAACAACTGAGAGGTGGCTACAACATAGCTGGTCTGTCT
genomic: ACAGGCTGATATAATCTGCAACAAGgtcaccaccc ... ttttttccagGTCAAGGAAATGAAACAACTGAGAGGTGGCTACAACATAGTTGGTCTGTCT
EST: gi|211533538|gb|FL409967.1|FL409967
EST:     ACAGGCTGATATAATCTGCAACAAG                         GTCAAGGAAATGAAACAACTGAGAGGTGGCTACAACATAGTTGGTCTGTCT
genomic: ACAGGCTGATATAATCTGCAACAAGgtcaccaccc ... ttttttccagGTCAAGGAAATGAAACAACTGAGAGGTGGCTACAACATAGTTGGTCTGTCT
EST: gi|211487556|gb|FL382361.1|FL382361
EST:     ACAGGCTGATATAATCTGCAACAAG                         GTCAAGGAAATGAAACAACTGAGAGGTGGCTACAACATAGTTGGTCTGTCT
genomic: ACAGGCTGATATAATCTGCAACAAGgtcaccaccc ... ttttttccagGTCAAGGAAATGAAACAACTGAGAGGTGGCTACAACATAGTTGGTCTGTCT
EST: gi|211530844|gb|FL420796.1|FL420796
EST:     ACAGGCTGATATAATCTGCAACAAG                         GTCAAGGAAATGAAACAACTGAGAGGTGGCTACAACATAGTTGGTCTGTCT
genomic: ACAGGCTGATATAATCTGCAACAAGgtcaccaccc ... ttttttccagGTCAAGGAAATGAAACAACTGAGAGGTGGCTACAACATAGTTGGTCTGTCT
EST: gi|32868245|gb|CF007927.1|CF007927
EST:     ACAGGCTGATATAATCTGCAACAAG                         GTCAAGGAAATGAAACAACTGAGAGGTGGCTACAACATAGTTGGTCTGTCT
genomic: ACAGGCTGATATAATCTGCAACAAGgtcaccaccc ... ttttttccagGTCAAGGAAATGAAACAACTGAGAGGTGGCTACAACATAGTTGGTCTGTCT
EST: gi|211504683|gb|FL413307.1|FL413307
EST:     ACAGGCTGATATAATCTGCAACAAG                         GTCAAGGAAATGAAACAACTGAGAGGTGGCTACAACATAGTTGGTCTGTCT
genomic: ACAGGCTGATATAATCTGCAACAAGgtcaccaccc ... ttttttccagGTCAAGGAAATGAAACAACTGAGAGGTGGCTACAACATAGTTGGTCTGTCT