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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACGAGCGCGCCAACCGCAACGTCGATATCCTCAGGGACTTCTGTCTGGAGCAGAACATCAAGTACTTCTATGATATCAAGGACCTCAGCGATTTCAGGgtatgcccactcctttgcttctcggtttatttagttgatatcttggcttctctgcctcctagtaccaaaatttaggttccctgtattttcccccttccacaatagtttgaatttcatatttgtttgcag

Basic information

species Zea mays
transcript GRMZM2G370852_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G370852_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g03260.1 (Oryza sativa), 5'ss of exon 3
CGACGAGCGCGCCAACCGCAACGTCGATATCCTCAGGGACTTCTGTCTGGAGCAGAACATCAAGTACTTCTATGATATCAAGGACCTCAGCGATTTCAGGgtatgcccactcctttgcttctcggtttatttagttgatatcttggcttctctgcctcctagtaccaaaatttaggttccctgtattttcccccttccacaatagtttgaatttcatatttgtttgcag
||| ||||| || ||||| || || |||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||| ||| ||||||  ||||||| |  | ||| | |     ||| |  | |||||| ||||  |  | ||  ||     |||    || | ||||  | |          ||  |  |||   || | ||  | || ||||||||
CGATGAGCGAGCAAACCGAAATGTTGATATCCTCAGGGATTTCTGTATGGAGCAGAACATCAAGTACTTCTATGACATCAAGGACCTGAGCAATTTCAAAgtatgccgatccattttcattatcttttctccaattgatagcttgtttgttttgtatc---aaacctgttttcatgttcattttgaagaaattttttaa--ataaactgcaatttgtgtt-gtttgcag

upper sequence: GRMZM2G370852_T03 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA17G37540.1 (Glycine max), 5'ss of exon 4
-CGACGAGCGCGCCAACCGCAACGTCGATATCCTCAGGGACTTCTGTCTGGAGCAGAACATCAAGTACTTCTATGATATCAAGGACCTCAGCGATTTCAGGgtatgcccactcctttgcttctcggtttatttagttgatatcttggcttctctgcctcctagtaccaaaatttaggttccctgtattttcccccttccacaat-agtttgaatttcatatttgtttgcag
  || || || ||||| ||||| || || ||  | || || ||||| |  |||||||| ||||||||||| |||||||| ||||| |||||  |||| | |||||||  | || |||| || |   |  || |   ||||   |||   | |     || ||  |  |  ||||   | | |  | |       | |  ||  | || ||  |    | |           
GTGATGAACGTGCCAATCGCAATGTAGACATATTAAGAGATTTCTGCCATGAGCAGAATATCAAGTACTTTTATGATATTAAGGATCTCAGTAATTTTAAggtatgc--attcttttgtttttttttcaatct---tgat---ttgttcttttcaattctta--aagagcattttaatgcacaatgtccaagaacattgactgtgagattataaaataca-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24764746|gb|CA399909.1|CA399909
EST:     AGCAGAACATCAAGTACTTCTATGATATCAAGGACCTCAGCGATTTCAGG                         GCTAATCCAGACTACAAGGGTGTCTGCCACATTGCACTTGCTCAGGAAGGC
genomic: AGCAGAACATCAAGTACTTCTATGATATCAAGGACCTCAGCGATTTCAGGgtatgcccac ... ttgtttgcagGCTAATCCAGACTACAAGGGTGTCTGCCACATTGCACTTGCTCAGGAAGGC