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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCGGTCGGTAACCTGTCTATGGAGGAGAAGCAGATCCAACAGAACATCCAAATGAGCGTCAACTTCCTCGTGTCTCTTCTGACGAAAAACTGGCAGAATgtgagtgatcctctggtctttattgcatctatgccttaagaattgttcctgttgtgtttacatctaatgaacattttagaatgtaagtcgaaggagttggttataacacgttgcgatgtatgcgttgcag

Basic information

species Zea mays
transcript GRMZM2G369991_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G369991_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os08g44380.2 (Oryza sativa), 5'ss of exon 5
CGCGGTCGGTAACCTGTCTATGGAGGAGAAGCAGATCCAACAGAACATCCAAATGAGCGTCAACTTCCTCGTGTCTCTTCTGACGAAAAACTGGCAGAATgtgagtgatcctctggtctttattgcatctatgccttaagaattgttcctgttgtgtttacatctaatgaacattttagaatgtaagtcgaaggagttggt--------tataacacgttgcgatgtatgcgttgcag
 || || |||||| |||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||| ||| ||| ||||||||||||||||||  |  |||   ||| || |||||  |   |||       || |||   ||||||||| |||||||  || || | |||||| | ||  ||             | ||||  |||  | | | ||| ||||||
TGCTGTGGGTAACTTGTCGATGGAGGAGAAGCAGATCCAGCAAAACATCCAAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAGAAGAACTGGCAGAATgtgagttctgttctcaacttcatggcatcagtagttta-----catttctg--atgtttacatgtaatgaaatttatatagtgtaagcccaacaagcaaacacaatcagtctaacttgttatggtttgtgctttgcag

upper sequence: GRMZM2G369991_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os08g44380.1 (Oryza sativa), 5'ss of exon 5
CGCGGTCGGTAACCTGTCTATGGAGGAGAAGCAGATCCAACAGAACATCCAAATGAGCGTCAACTTCCTCGTGTCTCTTCTGACGAAAAACTGGCAGAATgtgagtgatcctctggtctttattgcatctatgccttaagaattgttcctgttgtgtttacatctaatgaacattttagaatgtaagtcgaaggagttggt--------tataacacgttgcgatgtatgcgttgcag-----
    || |||||| |||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||| ||| ||| ||||||||||||||||||  |  |||   ||| || |||||  |   |||       || |||   ||||||||| |||||||  || || | |||||| | ||  ||             | ||||  |||  | | | ||| ||||||     
----GTGGGTAACTTGTCGATGGAGGAGAAGCAGATCCAGCAAAACATCCAAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAGAAGAACTGGCAGAATGTGAgttctgttctcaacttcatggcatcagtagttta-----catttctg--atgtttacatgtaatgaaatttatatagtgtaagcccaacaagcaaacacaatcagtctaacttgttatggtttgtgctttgcaggtgag

upper sequence: GRMZM2G369991_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os08g44450.1 (Oryza sativa), 5'ss of exon 4
CGCGGTCGGTAACCTGTCTATGGAGGAGAAGCAGATCCAACAGAACATCCAAATGAGCGTCAACTTCCTCGTGTCTCTTCTGACGAAAAACTGGCAGAATgtgagtgatcc--tctggtctttattgcatctat---gccttaagaattgttcctgtt----------gtgtttacatctaa----tgaacat-tttagaatgtaagtc---------gaaggagttggttataacacgttgcgatgtatgcgttgcag-----
    || |||||| |||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||| |||  || |||||||||||||||||| |||   ||||  | |  ||||||  |      ||||    |     |||||          |||  || || | |    ||  | |  || ||||   |||           ||  |  || | |||||  |      | | ||  |   ||     
----GTGGGTAACTTGTCAATGGAGGAGAAGCAGATCCAGCAAAACATCCAAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAgttatctgttctgagcctgtttgcatgcaattaaacttacagctcaaatctgtttaacaacatagtgaatatatatgagttttggccttgctttgaataatagttttatgtgagaaaacaactgatgataacttggaattgtttgtgtttgataggtgag

upper sequence: GRMZM2G369991_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os08g44450.3 (Oryza sativa), 5'ss of exon 2
CGCGGTCGGTAACCTGTCTATGGAGGAGAAGCAGATCCAACAGAACATCCAAATGAGCGTCAACTTCCTCGTGTCTCTTCTGACGAAAAACTGGCAGAATgtgagtgatc--ctctggtctttattgcatctatgc---cttaagaattgttcctgtt----------gtgtttacatctaa----tgaacat-tttagaatgtaagtc---------gaaggagttggttataacacgttgcgatgtatgcgttgcag
 || || |||||| |||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||| |||  || |||||||||||||||||| |||   ||||  | |  ||||||  |      ||||    |     |||||          |||  || || | |    ||  | |  || ||||   |||           ||  |  || | |||||  |      | | ||  |   ||
TGCTGTGGGTAACTTGTCAATGGAGGAGAAGCAGATCCAGCAAAACATCCAAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatctgttctgagcctgtttgcatgcaattaaacttacagctcaaatctgtttaacaacatagtgaatatatatgagttttggccttgctttgaataatagttttatgtgagaaaacaactgatgataacttggaattgtttgtgtttgatag