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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCTTTTCTTGTTGTGGGTGTGGTTATTTGGATTCTTGAGCATCGAATAAATGATGATTTCCGCGGCTCGCCGCGACAACAAATAATAACTATTGTTTGgtaaggatctgaatcgcatcttttgcactcactatacacacatcttattttcactttcaaatgttattgtttccatgcaacatgttacactttattggta...

Basic information

species Zea mays
transcript GRMZM2G369139_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G369139_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g02540.1 (Oryza sativa), 5'ss of exon 4
TGTCTTTTCTTGTTGTGGGTGTGGTTATTTGGATTCTTGAGCATCGAATAAATGATGATTTCCGCGGCTCGCCGCGACAACAAATAATAACTATTGTTTGgtaaggatctgaatcgcatcttttgcactcactatacacacatcttattttcactttcaaatgttattgtttccatgcaacatgtt-acactttattg-gta-
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TATTCTTTCTTGTTGTGGGTGCAGTTGTTTGGGTTCTTGAACATCGAATAAATGACGAATTCCGTGGCTCACCGCGAGAACAAATAATTACTATTTTCTGgtatggagctgatttgaacattttgtatcatctgcccacttgtcaa---tcaatctacagatattaagatacaaaaaaaccttttttgcaatacattgcacat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93017265|gb|EB642785.1|EB642785
EST:     AATAATGATTTCCGCGGCTCGCCGCGACAACAAATAATAACTATTGTTTG                         GTTCAGTTTTTCGACTCTGTTTTTTGCACATA
genomic: AATGATGATTTCCGCGGCTCGCCGCGACAACAAATAATAACTATTGTTTGgtaaggatct ... ttttctgcagGTTCAGTTTTTCGACTCTGTTTTT-GCACATA