1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTATGTTCCTAACCCTGTCCTAGTGATTATTGATGTTCAACCCAAGGAGCTTGGGATACCCACCAAGGCGTATTACGCCGTGGAAGAAGTTAAAGAGgtatgtctgggggatgagatgctggagtgtttcacttgcttgctcagtgtttaatatttttgttgcccttcccag
species | Zea mays |
transcript | GRMZM2G368908_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGCTTGGGATACCCACCAAGGCGTATTACGCCGTGGAAGAAGTTAAAGAG AATGCTACACAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATTEST: gi|32930134|gb|CF034946.1|CF034946
genomic: AGCTTGGGATACCCACCAAGGCGTATTACGCCGTGGAAGAAGTTAAAGAGgtatgtctgg ... cccttcccagAATGCTACACAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
EST: AGCTTGGGATACCCACCAAGGCGTATTACGCCGTGGAAGAAGTTAAAGAG AATGCTACACAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATTEST: gi|15208970|gb|BI430854.1|BI430854
genomic: AGCTTGGGATACCCACCAAGGCGTATTACGCCGTGGAAGAAGTTAAAGAGgtatgtctgg ... cccttcccagAATGCTACACAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
EST: AGCTTGGGATACCCACCAAGGCGTATTACGCCGTGGAAGAAGTTAAAGAG AATGCTACACAGAAAAGTCAGAAGEST: gi|148973687|gb|EE024808.2|EE024808
genomic: AGCTTGGGATACCCACCAAGGCGTATTACGCCGTGGAAGAAGTTAAAGAGgtatgtctgg ... cccttcccagAATGCTACACAGAAAAGTCAGAAG
EST: AGCTTGGGATACCCACCAAGGCGTATTACGCCGTGGAAGAAGTTAAAGAG AATGCTACACAGAANAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATTEST: gi|26456618|gb|CA828201.1|CA828201
genomic: AGCTTGGGATACCCACCAAGGCGTATTACGCCGTGGAAGAAGTTAAAGAGgtatgtctgg ... cccttcccagAATGCTACACAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
EST: AGCTTGGGATACCCACCAAGGCGTATTACGCCGTGGAAGAAGTTAAAGAG AATGCTACACAGAAAAGTCAGAAGGTATTTTGTCCATGTTCCTTCAGAAAT
genomic: AGCTTGGGATACCCACCAAGGCGTATTACGCCGTGGAAGAAGTTAAAGAGgtatgtctgg ... cccttcccagAATGCTACACAGAAAAGTCAGAAGGTATTT-GTCCATGTTCCTTCAGAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTATGTTCCTAACCCTGTCCTAGTGATTATTGATGTTCAACCCAAGGAGCTTGGGATACCCACCAAGGCGTATTACGCCGTGGAAGAAGTTAAAGAGgtatgtctgggggatgagatgctggagtgtttcacttgcttgctcagtgtttaatatttttgttgcccttcccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT