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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATAAAAGTTGTTCGCAGTATCCGCAAGTACCGTGATGCTGCAATGATTGAGATAGATGTGCTCAATCGCCTTGCAGAAAATGAGAAATACAGATCTCTgtgagtatctcagaaacctgattatgtaaagtataaccctattctgtttctgactcgtcagttcctcttcaattaccag

Basic information

species Zea mays
transcript GRMZM2G366935_T08
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G366935_T07 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g40840.1 (Oryza sativa), 5'ss of exon 4
CCATAAAAGTTGTTCGCAGTATCCGCAAGTACCGTGATGCTGCAATGATTGAGATAGATGTGCTCAATCGCCTTGCAGAAAATGAGAAATACAGATCTCTgtgagtatctcagaa-acctgattatgtaaagtataaccctattctgtttctgactcgtcagttcctcttcaattaccag
| |||||||||||||| || |||||||||||| | |||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| ||||||||| |||| || |  ||||     |||   ||  | | ||||||||||  |  |     || || | | |  ||||
CAATAAAAGTTGTTCGTAGCATCCGCAAGTACAGGGATGCTGCAATGATTGAGATCGATGTGCTCAACCGCCTTGCAGAAAATGAGAGATACAGATCACTgtgagtacctcaaaatatttgatcccaaaaatcttagtctt-ttctgtttctctcctgatcagtcttccttactggccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89248362|gb|DY620148.1|DY620148
EST:     GAGATAGATGTGCTCAATCGCCTTGCAGAAAATGAGAAATACAGATCTCT                         CTGTGTTCAAATACAGAGATGGTTTGACTATCGTAATCATATATGCATT
genomic: GAGATAGATGTGCTCAATCGCCTTGCAGAAAATGAGAAATACAGATCTCTgtgagtatct ... caattaccagCTGTGTTCAAATACAGAGATGGTTTGACTATCGTAATCATATATGCATT
EST: gi|76915209|gb|DV165882.1|DV165882
EST:     GAGATAGATGTGCTCAATCGCCTTGCAGAAAATGAGAAATACAGATCTCT                         CTGTGTTCAAATACAGAGATGGTTTGACTATCGTAATCATATATGCATT
genomic: GAGATAGATGTGCTCAATCGCCTTGCAGAAAATGAGAAATACAGATCTCTgtgagtatct ... caattaccagCTGTGTTCAAATACAGAGATGGTTTGACTATCGTAATCATATATGCATT
EST: gi|211511149|gb|FL155932.1|FL155932
EST:     GAGATAGATGTGCTCAATCGCCTTGCAGAAAATGAGAAATACAGATCTCT                         CTGTGTTCAAATACAGAGATGGTTTGACTATCGTAATCATATATGCATT
genomic: GAGATAGATGTGCTCAATCGCCTTGCAGAAAATGAGAAATACAGATCTCTgtgagtatct ... caattaccagCTGTGTTCAAATACAGAGATGGTTTGACTATCGTAATCATATATGCATT