1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGAGACTGATGACCTACCTCTGGACATTATTGAAGTGATACATGCATATTGGCAAGCTAAGAGGCAGAAAAAGGGAATGCCACTTATTCGACATTTCCAGgtgaacatatatttttgccttttatttttgtacttttggcttcttgtttagctttctattatttagtggtcatttggttcatacaataaagaaagcaagt...
species | Zea mays |
transcript | GRMZM2G363535_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGCAAGCTAAGAGGCAGAAAAAGGGAATGCCACTTATTCGACATTTCCAG TTCGCTATGTGGAAGGTCTACGAGCAACAGTTACATGAATGGGAATCGAAAEST: gi|211422783|gb|FL124236.1|FL124236
genomic: GGCAAGCTAAGAGGCAGAAAAAGGGAATGCCACTTATTCGACATTTCCAGgtgaacatat ... catttctcagTTCGCTATGTGGAAGGTCTACGAGCAACAGTTACATGAATGGGAATCGAAA
EST: GGCAAGCTAAGAGGCAGAAAAAGGGAATGCCACTTATTCGACATTTCCAG TTCGCTATGTGGAAGGTCTACGAGCAACAGTTACATGAATGGGAATCGAAAEST: gi|211422782|gb|FL124235.1|FL124235
genomic: GGCAAGCTAAGAGGCAGAAAAAGGGAATGCCACTTATTCGACATTTCCAGgtgaacatat ... catttctcagTTCGCTATGTGGAAGGTCTACGAGCAACAGTTACATGAATGGGAATCGAAA
EST: GGCAAGCTAAGAGGCAGAAAAAGGGAATGCCACTTATTCGACATTTCCAG TTCGCTATGTGGAAGGTCTACTAGCAACAGTTACATGAATGGGAATCGAAA
genomic: GGCAAGCTAAGAGGCAGAAAAAGGGAATGCCACTTATTCGACATTTCCAGgtgaacatat ... catttctcagTTCGCTATGTGGAAGGTCTACGAGCAACAGTTACATGAATGGGAATCGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGACTGATGACCTACCTCTGGACATTATTGAAGTGATACATGCATATTGGCAAGCTAAGAGGCAGAAAAAGGGAATGCCACTTATTCGACATTTCCAGgtgaacatatatttttgccttttatttttgtacttttggcttcttgtttagctttctattatttagtggtcatttggttcatacaataaagaaagcaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG