1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TCAGTTCAGCTGGAGCTGAAGCAGCAGCAGCAGCAGGAGGAGGCAGATCATGATCTCCTCCAACATCTCAACAGCATGGAGCTTGCATACATGgtgtctgtccgtcgtccgatccacaacatacatatgcatctctatcagcaagctggaaattaattaaatgttattaattcttgctgcttattgcattaatttgcatgcag
species | Zea mays |
transcript | GRMZM2G363429_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAGATCATGATCTCCTCCAACATCTCAACAGCATGGAGCTTGCATACATG ACGGTTAAAGAATCATTGAGGATGGCGAGCATAGTTTCCTGGTTTCCAAGGEST: gi|93282930|gb|EB675194.1|EB675194
genomic: CAGATCATGATCTCCTCCAACATCTCAACAGCATGGAGCTTGCATACATGgtgtctgtcc ... ttgcatgcagACGGTTAAAGAATCATTGAGGATGGCGAGCATAGTTTCCTGGTTTCCAAGG
EST: CAGATCATGATCTCCTCCAACATCTCAACAGCATGGAGCTTGCATACATG ACGGTTAAAGAATCATTGAGGATGGCGAGCATAGTTTCCTGGTTTCCAAGGEST: gi|50325974|gb|CO521100.1|CO521100
genomic: CAGATCATGATCTCCTCCAACATCTCAACAGCATGGAGCTTGCATACATGgtgtctgtcc ... ttgcatgcagACGGTTAAAGAATCATTGAGGATGGCGAGCATAGTTTCCTGGTTTCCAAGG
EST: CAGATCATGATCTCCTCCAACATCTCAACAGCATGGAGCTTGCATACATG ACGGTTAAAGAATCATTGAGGATGGCGAGCATAGTTTCCTGGTTTCCAAGGEST: gi|60355405|gb|DN222378.1|DN222378
genomic: CAGATCATGATCTCCTCCAACATCTCAACAGCATGGAGCTTGCATACATGgtgtctgtcc ... ttgcatgcagACGGTTAAAGAATCATTGAGGATGGCGAGCATAGTTTCCTGGTTTCCAAGG
EST: CAGATCATGATCTCCTCCAACATCTCAACAGCATGGAGCTTGCATACATG ACGGTTAAAGAATCATTGAGGATGGCGAGCATAGTTTCCTGGTTTCCAAGG
genomic: CAGATCATGATCTCCTCCAACATCTCAACAGCATGGAGCTTGCATACATGgtgtctgtcc ... ttgcatgcagACGGTTAAAGAATCATTGAGGATGGCGAGCATAGTTTCCTGGTTTCCAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAGTTCAGCTGGAGCTGAAGCAGCAGCAGCAGCAGGAGGAGGCAGATCATGATCTCCTCCAACATCTCAACAGCATGGAGCTTGCATACATGgtgtctgtccgtcgtccgatccacaacatacatatgcatctctatcagcaagctggaaattaattaaatgttattaattcttgctgcttattgcattaatttgcatgcag
- - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT