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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGGTAGGGACCTGATTGGTATCGCTCAAACAGGCTCAGGGAAAACATTATCTTATCTGTTACCTGGGTTGGTTCATGTTGGTGCCCAGCCTCGGCTAGgttggtttcctataaacttgctgtgagctttctgtatgttttctgactgtgtccatttcccttttaatattattcgttattctaattcctgtag

Basic information

species Zea mays
transcript GRMZM2G362850_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G362850_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g68320.3 (Oryza sativa), 5'ss of exon 3
AAGGGTAGGGACCTGATTGGTATCGCTCAAACAGGCTCAGGGAAAACATTATCTTATCTGTTACCTGGGTTGGTTCATGTTGGTGCCCAGCCTCGGCTAGgttggtttcctataaacttgctgtgagctttctgtatgttttctgactgtgtccatttcccttttaatattattcgttattctaattcctgtag
||||| |||||| |||| |||||||| ||||| ||||| ||||||||| ||||||| ||  | ||||||||||||||||||||||| |||||||| ||||||| |||||         || |  |   ||  |||| ||  |||  || | |  | ||  |  || |    || | || |      | | |   
AAGGGCAGGGACATGATCGGTATCGCACAAACTGGCTCTGGGAAAACACTATCTTACCTTCTCCCTGGGTTGGTTCATGTTGGTGCACAGCCTCGACTAGgtttgtttc---------tgttacggaattgatgtacgtgctct--ctattttaaattgtcaattgaatgaatgcattgtaacgggtgcag---