Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTTGAGATGGATACCTACAGATACCATGGCCACTCTATGTCAGATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgttttgatctttcagtatggaatttaaagcatgctatgcgtgtttcaattaattgtgttacaatatcatcag

Basic information

species Zea mays
transcript GRMZM2G361693_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G361693_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g50620.1 (Oryza sativa), 5'ss of exon 4
GTCCTTGAGATGGATACCTACAGATACCATGGCCACTCTATGTCAGATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgttttgatctttcagtatggaatttaaagcatgctatgcgt---gttt----caattaattgtgttacaatatcatcag
|| ||||| |||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||||||||||||| |||||||| || ||||| ||| |  | ||| | || | | ||   | |||   | || |   ||   ||||    | | | ||||| |||  ||  || |||
GTTCTTGAAATGGATACCTACAGGTACCATGGCCATTCTATGTCAGATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcctgtgacccttaaatttgtggtgtaattaacgccagatgtttggtttttaacgaattattgttttatcatgccaacag

upper sequence: GRMZM2G361693_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA08G40380.1 (Glycine max), 5'ss of exon 4
GTCCTTGAGATGGATACCTACAGATACCATGGCCACTCTATGTCAGATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaa--------ggttgt--tttgatctttcagt------atggaatttaaagcatgctatgcgtgtttcaattaattgtgttacaatatcatcag--
 | ||||| ||||| || |||||||||||||||||||| ||||| ||||| || ||||| ||||| ||  | ||||||||||| ||||| || ||||||         | |  |  |   || | | | |      ||  |  || | |  |    |   | ||| | ||  |  |||  |||| | || |   
ATTCTTGAAATGGACACATACAGATACCATGGCCACTCCATGTCTGATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTGAGACAGgtatcttactatgatcataatcaaatgtcttatttgtttaattaatattgaggagtttactctatcttttattttctcctgtc-caatctgattacag

upper sequence: GRMZM2G361693_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA02G03080.1 (Glycine max), 5'ss of exon 4
GTCCTTGAGATGGATACCTACAGATACCATGGCCACTCTATGTCAGATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgttttgatctttcagtatggaatttaaagcatgctatgcgtgtttcaattaattgtgttacaatatcatcag------------------
 | ||||| ||||| || |||||||||||||| ||||||||||| ||||| || ||||| ||||| ||  | ||||| ||||| ||||| || |||||  | |     |  ||   ||| ||  |||||      |  | | | | ||| |   | |||| |||  || |  |                     
ATTCTTGAAATGGACACTTACAGATACCATGGACACTCTATGTCTGATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAGgtttg-tcacactagtccc-cagcatacaatttcttat-tagtttacttttttgagaaatttgttttaatatttttttcttggctgatataattgtag

upper sequence: GRMZM2G361693_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA01G04470.1 (Glycine max), 5'ss of exon 2
GTCCTTGAGATGGATACCTACAGATACCATGGCCACTCTATGTCAGATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgttttgatctttcagtatggaatttaaagcatgctatgcgtgtttcaattaattgtgtta-caatatcatcag----------------
 | ||||| ||||| || |||||||||||||| ||||||||||| ||||  || ||||| ||||| ||  | ||||| ||||| ||||| || |||||  | |     |  ||   ||| ||  |||||      || | | |   ||| |   | |||| |||  ||| |     |                
ATTCTTGAAATGGACACTTACAGATACCATGGACACTCTATGTCTGATCATGGCAGCACATACCGTACACGTGATGAAATTTCTGGTGTGAGACAGgtttg-tcacactagtc--ccagcatacaatttcttatttgtt-tactattttgagaaatttgttttaataatttttcttggctgatataattgtag

upper sequence: GRMZM2G361693_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA18G17240.1 (Glycine max), 5'ss of exon 4
GTCCTTGAGATGGATACCTACAGATACCATGGCCACTCTATGTCAGATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggt------------------tgttttgatctttcagtatggaatttaaagcatgctatgcgtgtttcaattaattgtgttacaatatcatcag--
 | || |||||||| || |||||||||||||||||||| ||||| ||||| || ||||| ||||| ||  | ||||||||||| ||||| || ||||||   |                  |||  |  |  || | |    | |    ||  | || |   | ||| | ||  |  |||  |||| | || |   
ATTCTCGAGATGGACACATACAGATACCATGGCCACTCCATGTCTGATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTAAGACAGgtatattactataatcataattaaatgtcctatttgtttaattaatattgaggagtttactctatctcttttattttctcctgtc-caatctgattatag

upper sequence: GRMZM2G361693_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT1G59900.1 (Arabidopsis thaliana), 5'ss of exon 4
GTCCTTGAGATGGATACCTACAGATACCATGGCCACTCTATGTCAGATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgttttgatctttcagtatggaatttaaagcatgctatgcgtgtttcaattaattgt-----gttacaatatc-atcag------------------
 | ||||||||||| || ||||| ||||| || ||||| ||||| ||||| || ||||| ||||| ||| | |||||||| || ||||| ||||||||  | | || |   |   | |  |   | ||    |      |  |   | |  || || | |     || | || ||  ||  |                  
ATTCTTGAGATGGACACATACAGGTACCACGGTCACTCCATGTCTGATCCTGGGAGCACATACCGTACCCGAGATGAGATATCTGGTGTGAGGCAGgttcgttagtctctttacctgaaaaatcatttcttggtcgaggactcagctattgatgaaatctcaaaagtcaaaacatttatgtgctactctatatgactcag

upper sequence: GRMZM2G361693_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT1G24180.1 (Arabidopsis thaliana), 5'ss of exon 4
GTCCTTGAGATGGATACCTACAGATACCATGGCCACTCTATGTCAGATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgtt-ttgatctttcagtatggaatttaaagcatgctatgcgtgtttcaattaattgtgttacaatatcatcag------------
 ||||||||||||| || ||||||||||| || ||||||||||| || ||||||||||||||||| ||  | ||||| || || || || || ||||| || |  || || || | | ||  |     |  || |||        ||   |  || | | ||| |   | ||||| |            
ATCCTTGAGATGGACACTTACAGATACCACGGTCACTCTATGTCTGACCCAGGAAGCACTTACCGTACTCGTGATGAAATCTCTGGCGTGAGACAGgttagttctttgttcatttgtaagactactgctccaaccatatgcaatttgaaactttttaatctgtaaagttttcatcggtgttacctttag

upper sequence: GRMZM2G361693_T01 (Zea mays), 5'ss of exon 4
lower sequence: PP1S201_84V6.1 (Physcomitrella patens), 5'ss of exon 4
GTCCTTGAGATGGATACCTACAGATACCATGGCCACTCTATGTCAGATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgtt------ttgatcttt-cagtatggaatttaaagcatgctatgcgtgtttcaattaattgtgttacaatatcatcag----------------------------------------
||  | ||||||||||| |||||||| ||||| ||||||||||| || ||||| ||||| ||||| ||| | |||||||| || |||||  | |||||  | || |       ||||  ||  | | || |||  |       | || | | || |  |||  |||   |    |      |                                         
GTTTTGGAGATGGATACGTACAGATATCATGGTCACTCTATGTCTGACCCAGGCAGCACCTACCGAACCCGTGATGAGATCTCTGGTGTACGACAGgtgtgattctaatcaagttgacgttcactgcattgaaactgttttcggttaggagggtattgattgtttgccctgagttgctgagacccagatttattttcttacacttttttgctgatgtatacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78075088|gb|DV503522.1|DV503522
EST:     ATCCAGGAAGCACTTACCGCCCCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|76285908|gb|DV025476.1|DV025476
EST:     ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|71430300|gb|DR811350.1|DR811350
EST:     ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|91867561|gb|EB399727.1|EB399727
EST:     TCCAGGAAGCACTTACCGCACCCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: TCCAGGAAGCACTTACCGCA-CCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|76925282|gb|DV170361.1|DV170361
EST:     ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|50330864|gb|CO525990.1|CO525990
EST:     CAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: CAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|60399155|gb|DN231969.1|DN231969
EST:     ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|22819342|gb|BU499432.1|BU499432
EST:     ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|86471503|gb|DY237873.1|DY237873
EST:     ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|5670884|gb|AI932147.1|AI932147
EST:     GGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: GGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|60348121|gb|DN215094.1|DN215094
EST:     ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|26558514|gb|CA830749.1|CA830749
EST:     ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|40336728|gb|CK370798.1|CK370798
EST:     ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|67014771|gb|CO443520.1|CO443520
EST:     ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|89763316|gb|DY690567.1|DY690567
EST:     ATCCAGGAAGCACTTACCGCCCCAGGGATGAGATTTCAGGTGTCAGGCAG                         GACCGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGCCCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|76021451|gb|DT948621.1|DT948621
EST:     ATCCAGGAAGCACTTACCGCCCCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGCCCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|5847216|gb|AW000295.1|AW000295
EST:     ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|74233521|gb|DT641435.1|DT641435
EST:     ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|50332698|gb|CO527824.1|CO527824
EST:     ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|71770429|gb|DR968366.1|DR968366
EST:     ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|37395082|gb|CF634820.1|CF634820
EST:     ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|50335332|gb|CO530458.1|CO530458
EST:     ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|71432517|gb|DR813567.1|DR813567
EST:     ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|22472806|gb|BU037286.1|BU037286
EST:     ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|5847105|gb|AW000184.1|AW000184
EST:     AGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: AGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|5108256|gb|AI739969.1|AI739969
EST:     ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|71756697|gb|DR954634.1|DR954634
EST:     ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|17921802|gb|BM259453.1|BM259453
EST:     ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|6020670|gb|AW065703.1|AW065703
EST:     ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|87156670|gb|DY401459.1|DY401459
EST:     ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|31356997|gb|CD441354.1|CD441354
EST:     ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|111193578|gb|EE291714.1|EE291714
EST:     ATCCAGGAAGCACTTACCGCCCCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|78092533|gb|DV520907.1|DV520907
EST:     ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|17921476|gb|BM259127.1|BM259127
EST:     ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|24768276|gb|CA403405.1|CA403405
EST:     ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|74235161|gb|DT643075.1|DT643075
EST:     ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|71419909|gb|DR804937.1|DR804937
EST:     ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|78123323|gb|DV541707.1|DV541707
EST:     ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|71323252|gb|DR798280.1|DR798280
EST:     ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|5325121|gb|AI783312.1|AI783312
EST:     ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|71312003|gb|DR792517.1|DR792517
EST:     ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|84351245|gb|DW245650.1|DW245650
EST:     TCCAGGAAGACACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: TCCAGGAAG-CACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|88748419|gb|DY532560.1|DY532560
EST:     ATCCAGGAAGCACTTACCGCCCCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|33467100|gb|CF244149.1|CF244149
EST:     ATCCAGGAAGCACTTCCCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|149005248|gb|EE039795.2|EE039795
EST:     ATCCAGGAAGCACTTCCCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|22490952|gb|BU050875.1|BU050875
EST:     ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|76018760|gb|DT945930.1|DT945930
EST:     ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|50322896|gb|CO518022.1|CO518022
EST:     ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|78076521|gb|DV504955.1|DV504955
EST:     ATCCAGGAAGCACTTACCGCCCCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
EST: gi|94474454|gb|EB703412.1|EB703412
EST:     ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAG                         GAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG
genomic: ATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 230

GTCCTTGAGATGGATACCTACAGATACCATGGCCACTCTATGTCAGATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 387

GTCCTTGAGATGGATACCTACAGATACCATGGCCACTCTATGTCAGATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 381

GTCCTTGAGATGGATACCTACAGATACCATGGCCACTCTATGTCAGATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 525

GTCCTTGAGATGGATACCTACAGATACCATGGCCACTCTATGTCAGATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgt ... atatcatcagGAACGGGATCCAATTGAAAGGGTTAGAAAGTTGCTTTTGACTCATGACCTGGCAAATGCTGCTGAGCTCAAG