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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGCCAAGGCGAACCATGAATGCAAGTGAGTGTGTTGCACGAGGATGTGCTCTTCAGTGTGCTATGCTCAGCCCCACTTTCAAAGTGCGGGAATTCCAGgtttgagctcatctttttatctggtttaagctaccgaatggttatattattccactgccggtctgtcacactaatggatactaaaataattgcatactga...

Basic information

species Zea mays
transcript GRMZM2G361605_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G361605_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os05g08840.1 (Oryza sativa), 5'ss of exon 1
GGAGCCAAGGCGAACCATGAATGCAAGTGAGTGTGTTGCACGAGGATGTGCTCTTCAGTGTGCTATGCTCAGCCCCACTTTCAAAGTGCGGGAATTCCAGgtttgagctcatctttttatctggtttaagctaccgaatggttatattattccactgccggtctgtc--acactaatggatactaaaata-attgcatactga
||| || ||| | || |||||||||||||| |||||||| || ||||| ||||||||||||||| | || ||||||||||||||||| ||||||||  ||||      | |||| ||||    ||||  | |  ||  || || |    |       |   | ||||  |  ||||||      |  ||  |  | | |||  
GGAACCGAGGAGGACTATGAATGCAAGTGAATGTGTTGCCCGGGGATGCGCTCTTCAGTGTGCTGTTCTTAGCCCCACTTTCAAAGTCCGGGAATTTGAGgtactgatttatctattta---agtttctgttgacgtttgtttctgccgtagtgtatctattttgtctgattctaatgttcttgattatgtaacgtaaactag

upper sequence: GRMZM2G361605_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA15G01750.1 (Glycine max), 5'ss of exon 2
GGAGCCAAGGCGAACCATGAATGCAAGTGAGTGTGTTGCACGAGGATGTGCTCTTCAGTGTGCTATGCTCAGCCCCACTTTCAAAGTGCGGGAATTCCAGgtttgagctcatctttttatctggtttaagctaccgaatggtt--atattattccactgccggtctgtcac-actaatggatactaaaataattgcatactga
|||||| ||||| || |||||||| ||||||||||||||  | || |||||  | |||||||| || |||||||| ||||| ||||| ||||| || |||||   |  |   | |   ||     | | | |    |||  ||  ||||    |   |       | | || | | |||||    |  ||  ||   |  |  
GGAGCCTAGGCGGACAATGAATGCTAGTGAGTGTGTTGCCAGGGGCTGTGCATTGCAGTGTGCAATTCTCAGCCCAACTTTTAAAGTACGGGAGTTTCAGgtaaaaattttccctgccatta---taatgttttaaaattattcaatatggaactgttcagatctttttacgaatcatggacttcagcattttttattttttt

upper sequence: GRMZM2G361605_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA13G43630.2 (Glycine max), 5'ss of exon 2
GGAGCCAAGGCGAACCATGAATGCAAGTGAGTGTGTTGCACGAGGATGTGCTCTTCAGTGTGCTATGCTCAGCCCCACTTTCAAAGTGCGGGAATTCCAGgtttgagctcatctttttatctggtttaagctaccgaatggttatattattccactgccggtctgtcacactaatggatactaaaataattgcatactga---
|||||| ||||| || |||||||| ||||||||||||||  | || |||||  | |||||||| || ||||| || ||||| ||||| ||||| || |||||      ||  |    | | | | |         |||  |   |  |       |       |       | |||||  ||  |  | |||  |  | |   
GGAGCCTAGGCGGACAATGAATGCTAGTGAGTGTGTTGCCAGGGGTTGTGCATTGCAGTGTGCAATTCTCAGTCCAACTTTTAAAGTACGGGAGTTTCAGgtaaattttcccccggctgtattgctctctagtttgaaatgcc-ttctgcaaagttttataattaaagggatcatgga--cttcagcagttgttttgttattt

upper sequence: GRMZM2G361605_T02 (Zea mays), 5'ss of exon 4
lower sequence: AT1G79920.2 (Arabidopsis thaliana), 5'ss of exon 2
GGAGCCAAGGCGAACCATGAATGCAAGTGAGTGTGTTGCACGAGGATGTGCTCTTCAGTGTGCTATGCTCAGCCCCACTTTCAAAGTGCGGGAATTCCAGgt---ttgagctcatcttt--ttatctggtttaagctaccgaatggttatattattccactgccggtctgtcacactaatggatactaaaataattgcatactga--------------------
|||||| ||||| || ||||||||||||||||||||  |  | ||||||||  | |||||||| || ||||| || || || ||||| || |||||||||||   ||| ||  |||| |  |||  |   |   | ||    |  ||  |  ||  | |||   |  |||| | |||   || ||    | || |   ||  |||                    
GGAGCCCAGGCGTACAATGAATGCAAGTGAGTGTGTGTCGAGGGGATGTGCCTTGCAGTGTGCCATTCTCAGTCCGACCTTTAAAGTTCGCGAATTCCAGgtaatttgtgcatatctatgcttaagtaaatgtcgttattttaatgtacttgtaagcaactcgagaactgttatactccaggttatctgactagtcatattatgatttattttttgttctcttag

upper sequence: GRMZM2G361605_T02 (Zea mays), 5'ss of exon 4
lower sequence: AT1G79930.1 (Arabidopsis thaliana), 5'ss of exon 2
GGAGCCAAGGCGAACCATGAATGCAAGTGAGTGTGTTGCACGAGGATGTGCTCTTCAGTGTGCTATGCTCAGCCCCACTTTCAAAGTGCGGGAATTCCAGgtt-tgagctcatctttttatctggtttaa----gctaccgaatggttatattattccactgccggtctgtcacactaatggatactaaaataattgcatactga--------------------
|||||| ||||| || ||||||||||||||||||||  || | ||||||||  | |||||||| || ||||| || || || ||||| || |||||||||||  |  |  ||| | |     |   | ||    | ||       ||  |  ||  | |||   |  || | | |||   |  ||    | || |   ||  |||                    
GGAGCCCAGGCGGACAATGAATGCAAGTGAGTGTGTGTCAAGGGGATGTGCCTTGCAGTGTGCCATTCTCAGTCCGACCTTTAAAGTTCGCGAATTCCAGgtaattggtgcatatctacgcttaagtaaatgtcgttattttcatgtacttgtaagcaactcgagaacttttatactctagattatctgactagtcatattgtgatttattttttgttctcttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67041181|gb|CO467436.1|CO467436
EST:     CTCTTCAGTGTGCTATGCTCAGCCCCACTTTCAAAGTGCGGGAATTCCAG                         GTTAATGATGGGTCTCCTTTCTCAGTTGCGTTGTCATGGAAACAAGAATCC
genomic: CTCTTCAGTGTGCTATGCTCAGCCCCACTTTCAAAGTGCGGGAATTCCAGgtttgagctc ... tggtttgcagGTTAATGATGGGTTTCCTTTCTCAGTTGCGTTGTCATGGAAACAAGAATCC