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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCATTCTCATTGATAATGAAGATAAGCAAACTGGCAGCATCTACGAGCACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagagttaatatttattattgtgtttcaatttctttgtttgcacctgtttggagataattgaggtttatgtgttgattgcag

Basic information

species Zea mays
transcript GRMZM2G358059_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G358059_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os07g14270.2 (Oryza sativa), 5'ss of exon 4
CAGCATTCTCATTGATAATGAAGATAAGCAAACTGGCAGCATCTACGAGCACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagagttaatatttattattgtgtttcaatttctttgtttgcacctgtttggagataattgaggt-ttatgtgttgattgcag
|| ||| || ||||| ||||  || |||||| ||||||||||||||||||||||||||||||| || || ||| |||||||||||||||| ||||||||||| |   |     |||||  |   | | ||  |||  |||  |||     ||| |   ||   || || | |||  |  ||||| |||
CACCATACTTATTGACAATGTTGAGAAGCAATCTGGCAGCATCTACGAGCACTGGGATATTCTGCCTCCGAAGCAAATCAAGGACCCAGAAGCTAAGAAGgtattttgc----atattcctagctttcttggaatgccttgcttt---tgtgtctcttgaatgttaagatattaccttatgattacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148931875|gb|EC877339.2|EC877339
EST:     ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG                         CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: gi|60347982|gb|DN214955.1|DN214955
EST:     ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG                         CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGA
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGA
EST: gi|86467986|gb|DY234356.1|DY234356
EST:     ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG                         CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: gi|149074502|gb|EE162898.2|EE162898
EST:     ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG                         CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: gi|33103386|gb|CF063346.1|CF063346
EST:     ATTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG                         CCTGAGGACTGGGATGACAAAGAGT
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGT
EST: gi|7162446|gb|AW520068.1|AW520068
EST:     AGAAAATCAAGGACCCAGAGGCTAAGAAG                         CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
genomic: AGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: gi|71432523|gb|DR813573.1|DR813573
EST:     ACTGGGATATTCTTCCCCCTAAGAAA-TCAAGGACCCAGAGGCTAAGAAG                         CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: gi|33093068|gb|CF053062.1|CF053062
EST:     ACTGGGATATTCTTCCCCCTAAGCAAATCAAGGACCCAGAGGCTAAGAAG                         CCTGAGGACTGGGATGACAAGGAATACATTCCTGACCCTGAGGACAAGAAG
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: gi|18180018|gb|BM381228.1|BM381228
EST:     ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG                         CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: gi|149074540|gb|EE162939.2|EE162939
EST:     ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG                         CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: gi|149074503|gb|EE162899.2|EE162899
EST:     ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG                         CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: gi|86470502|gb|DY236872.1|DY236872
EST:     GAAAATCAAGAACCCAGAGGCTAAGAAG                         CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
genomic: GAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: gi|33095007|gb|CF055001.1|CF055001
EST:     ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG                         CCTGAGGACTGGGATGACAAGGAATACATTCCTGACCCTGAGGACAAGAAG
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: gi|71442155|gb|DR823205.1|DR823205
EST:     ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG                         CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: gi|20811062|gb|BQ295540.1|BQ295540
EST:     ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG                         CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: gi|32944681|gb|CF049500.1|CF049500
EST:     ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG                         CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: gi|9743085|gb|BE519233.1|BE519233
EST:     ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG                         CCTGAGGACTGGGATGACAAGG
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGG
EST: gi|148951386|gb|EC897102.2|EC897102
EST:     ACTGGGATATTCTTCCCCTTAAGAAAATCA-GGACCCAGAGGCTAAAAAG                         CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAC
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: gi|71438877|gb|DR819927.1|DR819927
EST:     ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG                         CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACA
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACA
EST: gi|148963937|gb|EE015058.2|EE015058
EST:     ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG                         CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGGACA-GAA
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGG-ACAAGAA
EST: gi|6021565|gb|AW066493.1|AW066493
EST:     ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG                         CCTGAGGACTGGGATGACAAGGAGGACATTCCTGACCCTGAGGACAAGAAG
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: gi|5268655|gb|AI770619.1|AI770619
EST:     ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG                         CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: gi|148937046|gb|EC881219.2|EC881219
EST:     CTGGGATATTC-TCCCCCTTAAGAAAATCAAGGACCCAGAGGCTAAGAAG                         CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
genomic: CTGGGATATTCTTCCCCC-TAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: gi|32938680|gb|CF043499.1|CF043499
EST:     CTGGGATATTTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG                         CCTGAGGACTGGGATGACAAGGAGT
genomic: CTGGGATATT-CTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGT
EST: gi|4647548|gb|AI622623.1|AI622623
EST:     AATCAAGGACCCAGAGGCTAAGAAG                         CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
genomic: AATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: gi|32939280|gb|CF044099.1|CF044099
EST:     ACTGGGATATTCTTCCCCCTAA-AAA-TCAAGGACCCAGAGGCTAAGAAG                         CCTGAGGACTGGGATGACAAGGAGT
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGT
EST: gi|21432285|gb|BQ547775.1|BQ547775
EST:     ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG                         CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: gi|32912239|gb|CF017051.1|CF017051
EST:     ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG                         CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: gi|9956198|gb|BE643632.1|BE643632
EST:     ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGACGCTAAGAAG                         CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: gi|60339239|gb|DN206212.1|DN206212
EST:     ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG                         CCTGAGGACTGGGATGACAAGGAGTACATT
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATT
EST: gi|32940367|gb|CF045186.1|CF045186
EST:     ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG                         CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: gi|32939935|gb|CF044754.1|CF044754
EST:     ACTGGGATATTCTTCCCCCTAA-AAA-TCAAGGACCCAGAGGCTAAGAAG                         CCTGAGGACTGGGATGACAAGGAGT
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGT
EST: gi|29543548|gb|CB603930.1|CB603930
EST:     ACTGGGATATTCTTCCCCCTAAGAAAATCAAAGACCCAGAGGCTAAGAAG                         CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCT
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCT
EST: gi|148931876|gb|EC877340.2|EC877340
EST:     ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG                         CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: gi|33094305|gb|CF054299.1|CF054299
EST:     ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGGAG                         CCTGAGGACTGGGATGACAAGGAGTAC
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTAC
EST: gi|8383235|gb|BE056178.1|BE056178
EST:     ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG                         CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: gi|7216518|gb|AW562640.1|AW562640
EST:     ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG                         CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: gi|71759740|gb|DR957677.1|DR957677
EST:     ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG                         CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: gi|148937047|gb|EC881220.2|EC881220
EST:     ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG                         CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: gi|7162466|gb|AW520088.1|AW520088
EST:     AGAAAATCAAGGACCCAGAGGCTAAGAAG                         CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
genomic: AGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: gi|71442156|gb|DR823206.1|DR823206
EST:     ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG                         CCTGAGGACTGGGATGACAAGGAGTACATTCCTGATCCTGAGGACAAGAAG
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
EST: gi|148963936|gb|EE015057.2|EE015057
EST:     ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAG                         CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG
genomic: ACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1187

CAGCATTCTCATTGATAATGAAGATAAGCAAACTGGCAGCATCTACGAGCACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 890

CAGCATTCTCATTGATAATGAAGATAAGCAAACTGGCAGCATCTACGAGCACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1246

CAGCATTCTCATTGATAATGAAGATAAGCAAACTGGCAGCATCTACGAGCACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 3123

CAGCATTCTCATTGATAATGAAGATAAGCAAACTGGCAGCATCTACGAGCACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagag ... ttgattgcagCCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAGCATTCTCATTGATAATGAAGATAAGCAAACTGGCAGCATCTACGAGCACTGGGATATTCTTCCCCCTAAGAAAATCAAGGACCCAGAGGCTAAGAAGgtgtgaagagttaatatttattattgtgtttcaatttctttgtttgcacctgtttggagataattgaggtttatgtgttgattgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG