1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTTTCTTTCTGGTTGTAACACTACTTTACCTAGATGCTATGATGCAAATTTAGTTGAGATCCCCGTTGAAAAGGAGACGCCAGATCATCACTATTATCATgtaaattattcttaacttctgaatttgatgagtgccagctatgaaagagtgccatgttgatgatttttctttgtttatttttgtaagcacag
species | Zea mays |
transcript | GRMZM2G357972_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TAGTTGAGATCCCCGTTGAAAAGGAGACGCCAGATCATCACTATTATCAT TTTGCATTTTTCACAACCAAGAAGGTGGAAGCATTTGAGGAGCTCACATGGEST: gi|32796222|gb|CD948458.1|CD948458
genomic: TAGTTGAGATCCCCGTTGAAAAGGAGACGCCAGATCATCACTATTATCATgtaaattatt ... gtaagcacagTTTGCATTTTTCACAACCAAGAAGGTGGAAGCATTTGAGGAGCTCACATGG
EST: GATCCCCGTTGAAAAGGAGACGCCAGATCATCACTATTATCAT TTAGCATTTTTCACAACCAAGAAGGTGGAAGCATTTGAGGAGCTCACATGGEST: gi|166574349|gb|EG160666.1|EG160666
genomic: GATCCCCGTTGAAAAGGAGACGCCAGATCATCACTATTATCATgtaaattatt ... gtaagcacagTTTGCATTTTTCACAACCAAGAAGGTGGAAGCATTTGAGGAGCTCACATGG
EST: TAGTTGAGATCCCCGTTGAAAAGGAGACGCCAGATCATCACTATTATCAT TTTGCATTTTTCACAACCAAGEST: gi|5915516|gb|AW053157.1|AW053157
genomic: TAGTTGAGATCCCCGTTGAAAAGGAGACGCCAGATCATCACTATTATCATgtaaattatt ... gtaagcacagTTTGCATTTTTCACAACCAAG
EST: TAGTTGAGATCCCCGTTGAAAAGGAGACGCCAGATCATCACTATGATCAT TTTGCATTTTTCNCAACCAAGAAGGTGGAAGCATTTGAGGAGCTCACATGGEST: gi|12968346|gb|BG265292.1|BG265292
genomic: TAGTTGAGATCCCCGTTGAAAAGGAGACGCCAGATCATCACTATTATCATgtaaattatt ... gtaagcacagTTTGCATTTTTCACAACCAAGAAGGTGGAAGCATTTGAGGAGCTCACATGG
EST: TAGTTGAGATCCCCGTTGAAAAGGAGACGCCAGATCATCACTATTATCAT TTTGCATTTTTCACAACCAAGAAGGTGGAAGCATTTGAGGAGCTCACATGG
genomic: TAGTTGAGATCCCCGTTGAAAAGGAGACGCCAGATCATCACTATTATCATgtaaattatt ... gtaagcacagTTTGCATTTTTCACAACCAAGAAGGTGGAAGCATTTGAGGAGCTCACATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTCTTTCTGGTTGTAACACTACTTTACCTAGATGCTATGATGCAAATTTAGTTGAGATCCCCGTTGAAAAGGAGACGCCAGATCATCACTATTATCATgtaaattattcttaacttctgaatttgatgagtgccagctatgaaagagtgccatgttgatgatttttctttgtttatttttgtaagcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA