1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GACTTGGAGTACCAGTCTTGGAATGGCCATCTAGGGTTAAAATTGCGGCTGGTTCAGCACGCGGAATAGCCTATCTTCATGAAGATTgtaatgacatttttcattctttcacctgtttttgtgatgattttcactactctcagtctcatgcttttttgtttaattcttttccttggcag
species | Zea mays |
transcript | GRMZM2G355636_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TAAAATTGCGGCTGGTTCAGCACGCGGAATAGCCTATCTTCATGAAGATT GTCACCCCAGAATAATCCACAGAGATATAAAGTCCTCTAATATTTTGCTGGEST: gi|211250045|gb|FL413628.1|FL413628
genomic: TAAAATTGCGGCTGGTTCAGCACGCGGAATAGCCTATCTTCATGAAGATTgtaatgacat ... tccttggcagGTCACCCCAGAATAATCCACAGAGATATAAAGTCCTCTAATATTTTGCTGG
EST: GCGGCTGGTTCAGCACGCGGAATAGCCTATCTTCATGAAGATT GTCACCCCAGAATAATCCACAGAGATATAAAGTCCTCTAATATTTTGCTGGEST: gi|20208296|gb|BQ134385.1|BQ134385
genomic: GCGGCTGGTTCAGCACGCGGAATAGCCTATCTTCATGAAGATTgtaatgacat ... tccttggcagGTCACCCCAGAATAATCCACAGAGATATAAAGTCCTCTAATATTTTGCTGG
EST: TAAAATTGCGGCTGGCTCAGCACGCGGAATAGCCTATCTTCATGAAGATT GTCACCCCAGAATAATCCACAGAG
genomic: TAAAATTGCGGCTGGTTCAGCACGCGGAATAGCCTATCTTCATGAAGATTgtaatgacat ... tccttggcagGTCACCCCAGAATAATCCACAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACTTGGAGTACCAGTCTTGGAATGGCCATCTAGGGTTAAAATTGCGGCTGGTTCAGCACGCGGAATAGCCTATCTTCATGAAGATTgtaatgacatttttcattctttcacctgtttttgtgatgattttcactactctcagtctcatgcttttttgtttaattcttttccttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA