1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AACCTCCATATTTGTTGTACCGGAACGCTTCACAAGAAGTCAATGGAATTTGGTTTTACAACCAACAGGACTGTGAAGCTGTTGCAAGTCTATTTGGAAGgtaaaggtcttcatgtattctcatctccccatgtcggaggagtctttgtctgaatttatgtagattattaacattactttaccatatttagtagttctga...
species | Zea mays |
transcript | GRMZM2G348866_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGGTTTTACAACCAACAGGACTGTGAAGCTGTTGCAAGTCTATTTGGAAG GATACTGAATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACEST: gi|76021487|gb|DT948657.1|DT948657
genomic: TGGTTTTACAACCAACAGGACTGTGAAGCTGTTGCAAGTCTATTTGGAAGgtaaaggtct ... gtattcgcagGATACTGAATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCAC
EST: TGGTTTTACAACCAACAGGACTGTGAAGCTGTTGCAAGTCTATTTGGAAG GATACTGAATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACEST: gi|76932642|gb|DV173100.1|DV173100
genomic: TGGTTTTACAACCAACAGGACTGTGAAGCTGTTGCAAGTCTATTTGGAAGgtaaaggtct ... gtattcgcagGATACTGAATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCAC
EST: TGGTTTTACAACCAACAGGACTGTGAAGCTGTTGCAAGTCTATTTGGAAG GATACTGAATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACEST: gi|76915823|gb|DV166138.1|DV166138
genomic: TGGTTTTACAACCAACAGGACTGTGAAGCTGTTGCAAGTCTATTTGGAAGgtaaaggtct ... gtattcgcagGATACTGAATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCAC
EST: TGGTTTTACAACCAACAGGACTGTGAAGCTGTTGCAAGTCTATTTGGAAG GATACTGAATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACEST: gi|50334180|gb|CO529306.1|CO529306
genomic: TGGTTTTACAACCAACAGGACTGTGAAGCTGTTGCAAGTCTATTTGGAAGgtaaaggtct ... gtattcgcagGATACTGAATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCAC
EST: TGGTTTTACAACCAACAGGACTGTGAAGCTGTTGCAAGTCTATTTGGAAG GATACTGAATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACEST: gi|86468761|gb|DY235131.1|DY235131
genomic: TGGTTTTACAACCAACAGGACTGTGAAGCTGTTGCAAGTCTATTTGGAAGgtaaaggtct ... gtattcgcagGATACTGAATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCAC
EST: TGGTTTTACAACCAACAGGACTGTGAAGCTGTTGCAAGTCTATTTGGAAG GATACTGAATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACEST: gi|101402261|gb|EB822718.1|EB822718
genomic: TGGTTTTACAACCAACAGGACTGTGAAGCTGTTGCAAGTCTATTTGGAAGgtaaaggtct ... gtattcgcagGATACTGAATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCAC
EST: TGGTTTTACAACCAACAGGACTGTGAAGCTGTTGCAAGTCTATTTGGAAG GATACTGAATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACEST: gi|78073578|gb|DV502012.1|DV502012
genomic: TGGTTTTACAACCAACAGGACTGTGAAGCTGTTGCAAGTCTATTTGGAAGgtaaaggtct ... gtattcgcagGATACTGAATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCAC
EST: TGGTTTTACAACCAACAGGACTGTGAAGCTGTTGCAAGTCTATTTGGAAG GATACTGAATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACEST: gi|76286853|gb|DV026421.1|DV026421
genomic: TGGTTTTACAACCAACAGGACTGTGAAGCTGTTGCAAGTCTATTTGGAAGgtaaaggtct ... gtattcgcagGATACTGAATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCAC
EST: TGGTTTTACAACCAACAGGACTGTGAAGCTGTTGCAAGTCTATTTGGAAG GATACTGAATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACEST: gi|78119406|gb|DV537790.1|DV537790
genomic: TGGTTTTACAACCAACAGGACTGTGAAGCTGTTGCAAGTCTATTTGGAAGgtaaaggtct ... gtattcgcagGATACTGAATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCAC
EST: TGGTTTTACAACCAACAGGACTGTGAAGCTGTTGCAAGTCTATTTGGAAG GATACTGAATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACEST: gi|211286797|gb|FL325896.1|FL325896
genomic: TGGTTTTACAACCAACAGGACTGTGAAGCTGTTGCAAGTCTATTTGGAAGgtaaaggtct ... gtattcgcagGATACTGAATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCAC
EST: TGGTTTTACAACCAACAGGACTGTGAAGCTGTTGCAAGTCTATTTGGAAG GATACTGAATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACEST: gi|211497313|gb|FL084183.1|FL084183
genomic: TGGTTTTACAACCAACAGGACTGTGAAGCTGTTGCAAGTCTATTTGGAAGgtaaaggtct ... gtattcgcagGATACTGAATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCAC
EST: TGGTTTTACAACCAACAGGACTGTGAAGCTGTTGCAAGTCTATTTGGAAG GATACTGAATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACEST: gi|71444517|gb|DR825567.1|DR825567
genomic: TGGTTTTACAACCAACAGGACTGTGAAGCTGTTGCAAGTCTATTTGGAAGgtaaaggtct ... gtattcgcagGATACTGAATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCAC
EST: TGGTTTTACAACCAACAGGACTGTGAAGCTGTTGCAAGTCTATTTGGAAG GATACTGAATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACEST: gi|93013298|gb|EB638818.1|EB638818
genomic: TGGTTTTACAACCAACAGGACTGTGAAGCTGTTGCAAGTCTATTTGGAAGgtaaaggtct ... gtattcgcagGATACTGAATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCAC
EST: TGGTTTTACAACCAACAGGACTGTGAAGCTGTTGCAAGTCTATTTGGAAA GATACTGAATGCTTACGCCAAAGTACCTCCAAAACCTAAAEST: gi|101396950|gb|EB820400.1|EB820400
genomic: TGGTTTTACAACCAACAGGACTGTGAAGCTGTTGCAAGTCTATTTGGAAGgtaaaggtct ... gtattcgcagGATACTGAATGCTTACGCCAAAGTACCTCCAAAACCTAAA
EST: TGGTTTTACAACCAACAGGACTGTGAAGCTGTTGCAAGTCTATTTGGAAG GATACTGAATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACEST: gi|71449627|gb|DR830677.1|DR830677
genomic: TGGTTTTACAACCAACAGGACTGTGAAGCTGTTGCAAGTCTATTTGGAAGgtaaaggtct ... gtattcgcagGATACTGAATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCAC
EST: TGGTTTTACAACCAACAGGACTGTGAAGCTGTTGCAAGTCTATTTGGAAG GATACTGAATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCACEST: gi|71447776|gb|DR828826.1|DR828826
genomic: TGGTTTTACAACCAACAGGACTGTGAAGCTGTTGCAAGTCTATTTGGAAGgtaaaggtct ... gtattcgcagGATACTGAATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCAC
EST: TGGTTTTACAACCAACAGGACTGTGAAGCTGTTGCAAGTCTATTTGGAAG GATACTGAATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCAC
genomic: TGGTTTTACAACCAACAGGACTGTGAAGCTGTTGCAAGTCTATTTGGAAGgtaaaggtct ... gtattcgcagGATACTGAATGCTTACGCCAAAGTACCTCCAAAACCTAAAGTGCCTTCCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACCTCCATATTTGTTGTACCGGAACGCTTCACAAGAAGTCAATGGAATTTGGTTTTACAACCAACAGGACTGTGAAGCTGTTGCAAGTCTATTTGGAAGgtaaaggtcttcatgtattctcatctccccatgtcggaggagtctttgtctgaatttatgtagattattaacattactttaccatatttagtagttctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG