1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TCCTGAAGCAACAAAAGCCTTAGAATTGATCTCCAATGCATTGCACATATGTCCACATTCGGACAGCGTCAAGGAGATGAAAGCAGAGGCATTGTTGATGgtttgtatttctctcttttggctcatttcatgaattattaagagcacctatacttcattgaattacaagagtgtctatactaacaaatgttcagggaatatccgttgtcatatatttatttcttgctactaatgtcatcgctgcactgaacag
species | Zea mays |
transcript | GRMZM2G348697_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTCCACATTCGGACAGCGTCAAGGAGATGAAAGCAGAGGCATTGTGGATG CTACGAAGATATGAAGAAGTGATTCAACTATGCCAAGAGTCTGTGAATCTGEST: gi|22489215|gb|BU049138.1|BU049138
genomic: GTCCACATTCGGACAGCGTCAAGGAGATGAAAGCAGAGGCATTGTTGATGgtttgtattt ... cactgaacagCTACGAAGATATGAAGAAGTGATTCAACTATGCCAAGAGTCTGTGAATCTG
EST: GTCCACATTCGGACAGCGTCAAGGAGATGAAAGCAGAGGCATTGTTGATG CTACGAAGATATGAAGAAGTGATTCAACTATGCCAAGAGTCTGTGAATCTGEST: gi|18384969|gb|BM418168.1|BM418168
genomic: GTCCACATTCGGACAGCGTCAAGGAGATGAAAGCAGAGGCATTGTTGATGgtttgtattt ... cactgaacagCTACGAAGATATGAAGAAGTGATTCAACTATGCCAAGAGTCTGTGAATCTG
EST: GTCCACATTCGGACAGCGTCAAGGAGATGAAAGCAGAGGCATTGTTGATG CTACGAAGATATGAAGAAGTGATTCAACTATGCCAAGAGTCTGTGAATCTGEST: gi|18384006|gb|BM417206.1|BM417206
genomic: GTCCACATTCGGACAGCGTCAAGGAGATGAAAGCAGAGGCATTGTTGATGgtttgtattt ... cactgaacagCTACGAAGATATGAAGAAGTGATTCAACTATGCCAAGAGTCTGTGAATCTG
EST: GTCCACATTCGGACAGCGTCAAGGAGATGAAAGCAGAGGCATTGTTGATG CTACGAAGATATGAAGAAGTGATTCAACTATGCCAAGAGTCTGTGAATCTG
genomic: GTCCACATTCGGACAGCGTCAAGGAGATGAAAGCAGAGGCATTGTTGATGgtttgtattt ... cactgaacagCTACGAAGATATGAAGAAGTGATTCAACTATGCCAAGAGTCTGTGAATCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTGAAGCAACAAAAGCCTTAGAATTGATCTCCAATGCATTGCACATATGTCCACATTCGGACAGCGTCAAGGAGATGAAAGCAGAGGCATTGTTGATGgtttgtatttctctcttttggctcatttcatgaattattaagagcacctatacttcattgaattacaagagtgtctatactaacaaatgttcagggaatatccgttgtcatatatttatttcttgctactaatgtcatcgctgcactgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG