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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATAGCTATAAAGAGTGGTTGGGATCAGTATGGTATTGCATACGGTCGTCCATCTTCTGACATTTTAATTCGCAATGTAACCGCCCGTTCTCTTGTGAGgtgagaattgagatatgttggctacattgtgtgtctacaataatctacttttgtgcatagtcctttgaagtcaaacctcaagagtagtaaattacgactatggtgtgtattgctgaacattatcaatcaggcttacactatctaccctatctttgtgcag

Basic information

species Zea mays
transcript GRMZM2G348602_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G348602_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv11s0016g00720.t01 (Vitis vinifera), 5'ss of exon 4
CAATAGCTATAAAGAGTGGTTGGGATCAGTATGGTATTGCATACGGTCGTCCATCTTCTGACATTTTAATTCGCAATGTAACCGCCCGTTCTCTTGTGAGgtgagaattgagatatgttg-gctacattgtgtgtctacaataatctacttttgtgcatagtcctttgaagtcaaacctcaagagtagtaaattacgactatggtgtgtattgctgaacattatcaatcaggcttacactatctaccctatctttgtgcag
 ||| || ||||||||||||||||||||||||||  |||| || || || || ||     ||||| | ||  | ||  |   |   || ||| | || ||||||||  |   | || |   |||   |  | ||   ||  | |||    | |||||||  |  ||     ||    | |   |  | | |||   |                                                                
GAATTGCAATAAAGAGTGGTTGGGATCAGTATGGAGTTGCCTATGGACGACCTTCAGTAAACATTCTCATCAGAAACCTTGTCATTCGCTCTATGGTCAGgtgagagcttttacatatgatgctttctgctctgcaaaccttcatcattctgtgtgcatgattgttatgcatctgcacacccaaacaatgaatcttgggc-------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|94473219|gb|EB702177.1|EB702177
EST:     CCATCTTCTGACATTTTAATTCGCAATGTAACCGCCCGTTCTCTTGTGAG                         TGCTGGAATTTCAATAGGCAGTGAGATGTCTGGCGGAGTTGCAAATGTTAC
genomic: CCATCTTCTGACATTTTAATTCGCAATGTAACCGCCCGTTCTCTTGTGAGgtgagaattg ... ctttgtgcagTGCTGGAATTTCAATAGGCAGTGAGATGTCTGGCGGAGTTGCAAATGTTAC