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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAGAATTGCACGCATATTTAACACATATGGCCCTCGAATGTGTTTAGATGATGGCCGAGTTGTTAGCAACTTTGTTGCACAGgtttgtctcagtttgtgattctgatgcattggagaagaggattatcatagaacttcagcactgcttaaagttggcattgcttcatttctag

Basic information

species Zea mays
transcript GRMZM2G347717_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G347717_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g17230.1 (Oryza sativa), 5'ss of exon 4
GTGAGAATTGCACGCATATTTAACACATATGGCCCTCGAATGTGTTTAGATGATGGCCGAGTTGTTAGCAACTTTGTTGCACAGgtttgtctcagtttgtgattctgatgcattggagaagaggatta----tcatagaacttcagcactgcttaaagttggcattgcttcatttctag
||||||||||| || ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || || ||||||||| | | ||| ||||||| || | ||||| ||||| | ||    |  | ||| || |||| | ||||   ||     ||| ||||||| ||
GTGAGAATTGCGCGAATATTCAACACATATGGCCCTCGTATGTGTTTAGATGATGGGCGAGTTGTTAGCAACTTCGTCGCTCAGgtttgtgttaatttatgattctaatcctttggaaaagagaaataagtatatttgaagtttagcattacttactattaaagatgcctcatttccag

upper sequence: GRMZM2G347717_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA10G05260.1 (Glycine max), 5'ss of exon 4
GTGAGAATTGCACGCATATTTAACACATATGGCCCTCGAATGTGTTTAGATGATGGCCGAGTTGTTAGCAACTTTGTTGCACAGgtttgtctcagtttgtgattctgatgcattggagaagaggattatcatagaacttcagcactgcttaaagttggcattgcttcatttctag
||  | ||||| || || || ||||||||||| || || |||||||| |||||||| || ||||||||||| ||||||||||||||||| ||   ||  ||    |  |  ||| |  |  |   |    | || | ||          ||   ||    |   |   |||| ||
GTTCGTATTGCTCGAATTTTCAACACATATGGACCCCGCATGTGTTTGGATGATGGGCGTGTTGTTAGCAATTTTGTTGCACAGgtttgact---ttcttgtccttatttaatttgtcattattgtgg--agagcaatttgtgttcttatactatttatttacatatgtttccag

upper sequence: GRMZM2G347717_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA13G19640.1 (Glycine max), 5'ss of exon 4
GTGAGAATTGCACGCATATTTAACACATATGGCCCTCGAATGTGTTTAGATGATGGCCGAGTTGTTAGCAACTTTGTTGCACAGgtttgtctcagtttgtgattctgatgcattggagaagaggattatcatagaacttcagcactgcttaaagttggcattgcttcatttctag--
||  | ||||| || || || || |||||||| || || |||||||| |||||||| || || |||||||| |||||||||||||||||    | ||| |  | || ||   ||     |      |      ||||||  |   | |||| | |    |||  || || | |    
GTTCGTATTGCTCGAATTTTCAATACATATGGACCCCGCATGTGTTTGGATGATGGGCGTGTCGTTAGCAATTTTGTTGCACAGgtttg----attttcttgtccttattttttttgtcattattgtggagaggaacttgtg---ttcttatactatatatttatttatgtttgcag

upper sequence: GRMZM2G347717_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT3G53520.4 (Arabidopsis thaliana), 5'ss of exon 4
GTGAGAATTGCACGCATATTTAACACATATGGCCCTCGAATGTGTTTAGATGATGGCCGAGTTGTTAGCAACTTTGTTGCACAGgtttgtctcagtttgtgattctgatgca------ttggagaagaggattatcatagaacttcagcactgct--taaagttggcattgcttcatttctag
|| |||||||| || || || ||||||||||| ||  |||||||  | |||||||| || |||||||| ||||||||||| |||||||  |||  |     |     |  ||      || |   | ||  || | | |  |||    ||   ||  |   | |   ||   | ||       
GTTAGAATTGCTCGTATTTTCAACACATATGGGCCCAGAATGTGCCTTGATGATGGGCGTGTTGTTAGTAACTTTGTTGCCCAGgtttagctccttcatcaacataaagacaaccgctttcgtataaagccttttgaaaacactctgacagaactattgtggcttatatctatgcag------

upper sequence: GRMZM2G347717_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv08s0040g02710.t01 (Vitis vinifera), 5'ss of exon 5
GTGAGAATTGCACGCATATTTAACACATATGGCCCTCGAATGTGTTTAGATGATGGCCGAGTTGTTAGCAACTTTGTTGCACAGgtttg---tctcagtttgtgattctgatgcattggagaagaggattatcatagaacttcagcactgcttaaagtt--ggcattgcttcatttctag----------------
||  | || ||||| || || || |||||||| ||||| |||||| | |||||||| || || |||||||| |||||||||||||||||   ||     || |  | || |    |  |  ||    | |       | |||   || |  |  |||||      ||  || |  | |                  
GTACGTATAGCACGGATTTTCAATACATATGGGCCTCGTATGTGTATTGATGATGGGCGTGTGGTTAGCAATTTTGTTGCACAGgtttgatctcctgacttattttccttacagttctgccaaacacaatgaaccgaatcttagacatttttataagttctaaagtttttttaactgttatagctatgttttgcag

upper sequence: GRMZM2G347717_T01 (Zea mays), 5'ss of exon 4
lower sequence: PP1S60_124V6.1 (Physcomitrella patens), 5'ss of exon 5
GTGAGAATTGCACGCATATTTAACACATATGGCCCTCGAATGTGTTTAGATGATGGCCGAGTTGTTAGCAACTTTGTTGCACAGgtttgtctcagtttgtgattctgatgcattggagaagaggattatcatagaacttcagcactgcttaaagttg-gcatt-gcttcatttctag-------------------------------------------------------------------------------------
||||| ||||| || ||||| ||||| ||||| ||| |||||||  | || ||||| || ||||| |||||||| ||||||||||||||      |||      ||  ||| | | |  ||  | || |       |||| |   |   || |  |    ||| | ||  |||| ||                                                                                     
GTGAGGATTGCTCGGATATTCAACACGTATGGACCTAGAATGTGCATTGACGATGGACGCGTTGTCAGCAACTTCGTTGCACAGgtttgctcttcttt-----cctagtgcttggtattagcagtttttttc----cttctgttatatctatatctatatatttgttttgtttcgaggagtataattatttagatgtgttgcatgcttcagcctgttttcagtagctttggtaggatcggcttctaacactctttgtctcag

upper sequence: GRMZM2G347717_T01 (Zea mays), 5'ss of exon 4
lower sequence: EFJ23020 (Selaginella moellendorffii), 5'ss of exon 4
GTGAGAATTGCACGCATATTTAACACATATGGCCCTCGAATGTGTTTAGATGATGGCCGAGTTGTTAGCAACTTTGTTGCACAGgtttgtctcagtttgtgattctgatgcattggagaagaggattatcatagaacttcagcactgcttaaagttggcattgcttcatttctag
||||| || || || || || ||||||||||| ||| |||||||  | || |||||||||||||| |||||||| || || |||||         |         |||     |           | ||  |    |||   | | |                            
GTGAGGATCGCTCGTATTTTCAACACATATGGTCCTAGAATGTGCCTGGACGATGGCCGAGTTGTCAGCAACTTCGTGGCCCAGgtacaaaagcatcc-----cttgaaaagcttcttcccgttttcattcttttgctttctcgcag----------------------------

upper sequence: GRMZM2G347717_T01 (Zea mays), 5'ss of exon 4
lower sequence: EFJ30517 (Selaginella moellendorffii), 5'ss of exon 5
GTGAGAATTGCACGCATATTTAACACATATGGCCCTCGAATGTGTTTAGATGATGGCCGAGTTGTTAGCAACTTTGTTGCACAGgtttgtctcagtttgtgattctgatgcattggagaagaggattatcatagaacttcagcactgcttaaagttggcattgcttcatttctag
||||| || || || || || ||||||||||| ||| |||||||  | || |||||||||||||| |||||||| || || |||||         |  ||     |||     |           | ||  |   ||||   | | |                            
GTGAGGATCGCTCGTATTTTCAACACATATGGTCCTAGAATGTGCCTGGACGATGGCCGAGTTGTCAGCAACTTCGTGGCCCAGgtacaaaagcatccgt-----tgaaaagcttcttcccgttttcattcttttactttctcgcag----------------------------