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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAAAATTTTCAGTAAATCAAGGGAGTGCTACACTATTGCCTATTGAAGGAAACTATTCTCGAGGAAATTTGATGCTTCAGAGAATAAAGACATACATTgtaagtgtatcggcttcatttagatcattaaattttctgcatatggtctctcaaaattacttatgtgatccatgtattactgctatcatcatctttatgcattattttgaactgtaagagttatatttatgtatcttatcctcatatttag

Basic information

species Zea mays
transcript GRMZM2G342254_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G342254_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os06g37430.1 (Oryza sativa), 5'ss of exon 3
TTCAAAATTTTCAGT-AAATCAAGGGAGTGCTACACTATTGCCTATTGAAGGAAACTATTCTCGAGGAAATTTGATGCTTCAGAGAATAAAGACATACATTgtaagtgtatcggcttcatttagatcattaaattttctgcatatggtctctcaaaattacttatgtgatccatgtattactgctatcatcatctttatgcattattttgaactgtaagagttatatttatgtatcttatcctcatatttag
 ||  ||||   ||| || ||| |||||||||    ||||||||||||||||||| |||||||||||||| |||||| ||||||| || | | | ||||| |||||| | |  |  |||      || | | | |  || |||     | |||||  ||   | | || |   || |    |||   || || | | |  || |  | |                                           
-TCCTAATTCAAAGTTAACTCATGGGAGTGCTGTGATATTGCCTATTGAAGGAAATTATTCTCGAGGAAACTTGATGTTTCAGAGGATCAGGTCCTACATAgtaagtctgt--gtctcaacgttctcttcatactacctacat-----ccctcaatgtttgatgt-tggttagtgcaaatttgcacacaccaacatcaaacaatcctat-------------------------------------------