1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTTAATTCACAGAGTTCCTCTATATCTTCCCAAGTGAATCTTGGAGTTCAAGGAACAGgtattacctcatctacaacatcagaatttataagcccccagttctgcagaaatataaacacaggattttattgcattcagttgggaaaagaaattgcaatgtttgaagtattttatccatagttgtttgtcatgcattgagaatttatccatctgtgcag
species | Zea mays |
transcript | GRMZM2G340749_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCTCTATATCTTCCCAAGTGAATCTTGGAGTTCAAGGAACAG ATGCTGGGCATATAAAAAGTGAAGAAGAAGAACAACTTTTGGCTGAAGATGEST: gi|40334743|gb|CK368813.1|CK368813
genomic: CCTCTATATCTTCCCAAGTGAATCTTGGAGTTCAAGGAACAGgtattacctc ... atctgtgcagATGCTGGGCATATAAAAAGTGAAGAAGAAGAACAACTTTTGGCTGAAGATG
EST: ACAGAGTTCCTCTATATCTTCCCAAGTGAATCTTGGAGTTCAAGGAACAG ATGCTGGGCATATAAAAAGTGGAGAAGAGGAACA-CTTTTGGCTGAAGATG
genomic: ACAGAGTTCCTCTATATCTTCCCAAGTGAATCTTGGAGTTCAAGGAACAGgtattacctc ... atctgtgcagATGCTGGGCATATAAAAAGTGAAGAAGAAGAACAACTTTTGGCTGAAGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTAATTCACAGAGTTCCTCTATATCTTCCCAAGTGAATCTTGGAGTTCAAGGAACAGgtattacctcatctacaacatcagaatttataagcccccagttctgcagaaatataaacacaggattttattgcattcagttgggaaaagaaattgcaatgtttgaagtattttatccatagttgtttgtcatgcattgagaatttatccatctgtgcag
- - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - AAGGAA