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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTACGAGGAGTTCATCACGGCGACGATGCACATGAACCGGATGGATCGCGACGAGCACCTCTACACCGCGTTCCAGTACTTCGACAAGGACAACAGCGGgtaacgacttggtctttctgaatataatcctgatcgatgcgacgccagccggctggttgtctctgtctcatgcatgcgatctatgctgccatgccag

Basic information

species Zea mays
transcript GRMZM2G340224_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G340224_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os05g41270.1 (Oryza sativa), 5'ss of exon 6
ACTACGAGGAGTTCATCACGGCGACGATGCACATGAACCGGATGGATCGCGACGAGCACCTCTACACCGCGTTCCAGTACTTCGACAAGGACAACAGCGGgta-acgacttgg----tctttctgaatataat-cctgatcgatgcgacgccagccggctggttgtctctgtctc---atgcatgcgatctatgctgccatgccag-------------------
| ||||||||||||||||| |||||||||||||||||| |||||||  | || |||||||||||||||||||||||||||||||||||||||||||||||||  |     ||     ||| |     |  ||| ||   ||  |  |  | |||| |       || || || |     ||||  |  ||   ||||  |  |||                    
ATTACGAGGAGTTCATCACTGCGACGATGCACATGAACAGGATGGACAGGGAGGAGCACCTCTACACCGCGTTCCAGTACTTCGACAAGGACAACAGCGGgtgcattttctgaaaattctgttcagctgcaatgccatttcagtttgcagtcagcagtagaacagtatcagtatgcggttgcaaacattcagagctgaaa-accaacgcacatttctgctgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71425328|gb|DR806616.1|DR806616
EST:     GACGAGCACCTCTACACCGCGTTCCAGTACTTCGACAAGGACAACAGCGG                         GTACATCACGATGGAAGAGCTGGAGCAAGCCCTGAGGGAGAAGGGCCTGCT
genomic: GACGAGCACCTCTACACCGCGTTCCAGTACTTCGACAAGGACAACAGCGGgtaacgactt ... gccatgccagGTACATCACGATGGAAGAGCTGGAGCAAGCCCTGAGGGAGAAGGGCCTGCT
EST: gi|21481043|gb|BQ577726.1|BQ577726
EST:     GACGAGCACCTCTACACCGCGTTCCAGTACTTCGACAAGGACAACAGCGG                         GTACATCACGATGGAAGAGCTGGAGCAAGCCCTTGAGGGAGAAAGGCCTGC
genomic: GACGAGCACCTCTACACCGCGTTCCAGTACTTCGACAAGGACAACAGCGGgtaacgactt ... gccatgccagGTACATCACGATGGAAGAGCTGGAGCAAGCCCT-GAGGGAGAAGGGCCTGC
EST: gi|21330641|gb|BQ486022.1|BQ486022
EST:     GACGAGCACCTCTACACCGCGTTCCAGTACTTCGACAAGGACAACAGCGG                         GTACATCACGATGGAAGAGCTGGAGCAAGCCCTGAGGGAGAAGGGCCTGCT
genomic: GACGAGCACCTCTACACCGCGTTCCAGTACTTCGACAAGGACAACAGCGGgtaacgactt ... gccatgccagGTACATCACGATGGAAGAGCTGGAGCAAGCCCTGAGGGAGAAGGGCCTGCT
EST: gi|7304607|gb|AW600546.1|AW600546
EST:     GACGAGCACCTCTACNCCGCGTTCCAGTACTTCGACAAGGACAACAGCGG                         GTACATCACGATGGAAGAGCTGGAGCAAGCCCTGAGGGAGAAGGGCCTGCT
genomic: GACGAGCACCTCTACACCGCGTTCCAGTACTTCGACAAGGACAACAGCGGgtaacgactt ... gccatgccagGTACATCACGATGGAAGAGCTGGAGCAAGCCCTGAGGGAGAAGGGCCTGCT
EST: gi|86466802|gb|DY233172.1|DY233172
EST:     GACGAGCACCTCTACACCGCGTTCCAGTACTTCGACAAGGACAACAGCGG                         GTACATCACGATGGAAGAGCTGGAGCAAGCCCTGAGGGAGAAGGGCCTGCT
genomic: GACGAGCACCTCTACACCGCGTTCCAGTACTTCGACAAGGACAACAGCGGgtaacgactt ... gccatgccagGTACATCACGATGGAAGAGCTGGAGCAAGCCCTGAGGGAGAAGGGCCTGCT
EST: gi|21480881|gb|BQ577564.1|BQ577564
EST:     GACGAGCACCTCTACACCGCGTTCCAGTACTTCGACAAGGACAACAGCGG                         GTACATCACGATGGAAGAGCTGGAGCAAGCCCTGAGGGAGAAGGGCCTGCT
genomic: GACGAGCACCTCTACACCGCGTTCCAGTACTTCGACAAGGACAACAGCGGgtaacgactt ... gccatgccagGTACATCACGATGGAAGAGCTGGAGCAAGCCCTGAGGGAGAAGGGCCTGCT
EST: gi|21390432|gb|BQ528481.1|BQ528481
EST:     GACGAGCACCTCTACACCGCGTTCCAGTACTTCGACAAGGACAACAGCGG                         GTACATCACGATGGAAGAGCTGGAGCAAGCCCTGAGGGAGAAGGGCCTGCT
genomic: GACGAGCACCTCTACACCGCGTTCCAGTACTTCGACAAGGACAACAGCGGgtaacgactt ... gccatgccagGTACATCACGATGGAAGAGCTGGAGCAAGCCCTGAGGGAGAAGGGCCTGCT
EST: gi|87154477|gb|DY399266.1|DY399266
EST:     GACGAGCACCTCTACACCGCGTTCCAGTACTTCGACAAGGACAACAGCGG                         GTACATCACGATGGAAGAGCTGGAGCAAGCCCTGAGGGAGAAGGGCCTGCT
genomic: GACGAGCACCTCTACACCGCGTTCCAGTACTTCGACAAGGACAACAGCGGgtaacgactt ... gccatgccagGTACATCACGATGGAAGAGCTGGAGCAAGCCCTGAGGGAGAAGGGCCTGCT
EST: gi|71765068|gb|DR963005.1|DR963005
EST:     GACGAGCACCTCTACACCGCGTTCCAGTACTTCGACAAGGACAACAGCGG                         GTACATCACGATGGAAGAGCTGGAGCAAGCCCTGAGGGAGAAGGGCCTGCT
genomic: GACGAGCACCTCTACACCGCGTTCCAGTACTTCGACAAGGACAACAGCGGgtaacgactt ... gccatgccagGTACATCACGATGGAAGAGCTGGAGCAAGCCCTGAGGGAGAAGGGCCTGCT
EST: gi|21330105|gb|BQ485486.1|BQ485486
EST:     GACGAGCACCTCTACACCGCGTTCCAGTACTTCGACAAGGACAACAGCGG                         GTACATCACGATGGAAGAGCTGGAGCAAGCCCTGAGGGAGAAGGGCCTGCT
genomic: GACGAGCACCTCTACACCGCGTTCCAGTACTTCGACAAGGACAACAGCGGgtaacgactt ... gccatgccagGTACATCACGATGGAAGAGCTGGAGCAAGCCCTGAGGGAGAAGGGCCTGCT
EST: gi|21390265|gb|BQ528314.1|BQ528314
EST:     GACGAGCACCTCTACACCGCGTTCCAGTACTTCGACAAGGACAACAGCGG                         GTACATCACGATGGAAGAGCTGGAGCAAGCCCTGAGGGAGAAGGGCCTGCT
genomic: GACGAGCACCTCTACACCGCGTTCCAGTACTTCGACAAGGACAACAGCGGgtaacgactt ... gccatgccagGTACATCACGATGGAAGAGCTGGAGCAAGCCCTGAGGGAGAAGGGCCTGCT
EST: gi|12046168|gb|BF728307.1|BF728307
EST:     GACGAGCACCTCTACACCGCGTTCCAGTACTTCGACAAGGACAACAGCGG                         GTACATCACGATGGAAGAGCTGGAGCAAGCCCTGAGGGAGAAGGGCCTGCT
genomic: GACGAGCACCTCTACACCGCGTTCCAGTACTTCGACAAGGACAACAGCGGgtaacgactt ... gccatgccagGTACATCACGATGGAAGAGCTGGAGCAAGCCCTGAGGGAGAAGGGCCTGCT
EST: gi|7216885|gb|AW563007.1|AW563007
EST:     GACGAGCACCTCTACACCGCGTTCCAGTACTTCGACAAGGACAACAGCGG                         GTACATCACGATGGAAGAGCTGGAGCAAGCCCTGAGGGAGAAGGGCCTGCT
genomic: GACGAGCACCTCTACACCGCGTTCCAGTACTTCGACAAGGACAACAGCGGgtaacgactt ... gccatgccagGTACATCACGATGGAAGAGCTGGAGCAAGCCCTGAGGGAGAAGGGCCTGCT