Sequence
atgc intronic sequence ATGC exonic sequenceTGGAAAGAATGTGTTCCAACTGGAAGGGTTATTGGAGACCAGTCTTCAGTTGGAACCATGGAAAAGGATGAAAGGCAAATGGCAATGGCCACTGACCAAGgtggtaatgcctattttttacttcatctgtttcctgcctaaaaaatataagtttctctacaccgattgtttacagatataataaaggcaactccattacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G337819_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g62810.3 (Oryza sativa), 5'ss of exon 1
TGGAAAGAATGTGTTCCAACTGGAAGGGTTATTGGAGACCAGTCTTCAGTTGGAACCATGGAAAAGGATGAAAGGCAAATGGCAATGGCCACTGACCAAGgtggtaatgcctattttttacttcatctgtttcctgcctaaaaaatataagtttctctacaccgattgtttacagatataataaaggcaactccattacag
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TGGAAAGAATGTGTTCCAACAGGAAGGGTCATTTCTGACCAATCTTCTGGTGGAACTTTGGAAAAAGATGAAAGACAGAGTGCGATTGCCGCTGACCAAGgtggtgatgattactgcctaccttgtttcatttgtgcctaaaaagtataagcttctctacatcaattgttttcagatataacaaaggcaactccattacag
upper sequence: GRMZM2G337819_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g62810.1 (Oryza sativa), 5'ss of exon 4
TGGAAAGAATGTGTTCCAACTGGAAGGGTTATTGGAGACCAGTCTTCAGTTGGAACCATGGAAAAGGATGAAAGGCAAATGGCAATGGCCACTGACCAAGgtggtaatgcctattttttacttcatctgtttcctgcctaaaaaatataagtttctctacaccgattgtttacagatataataaaggcaactccattacag
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---AAAGAATGTGTTCCAACAGGAAGGGTCATTTCTGACCAATCTTCTGGTGGAACTTTGGAAAAAGATGAAAGACAGAGTGCGATTGCCGCTGACCAAGGTGgtgatgattactgcctaccttgtttcatttgtgcctaaaaagtataagcttctctacatcaattgttttcagatataacaaaggcaactccattacag
upper sequence: GRMZM2G337819_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g62810.4 (Oryza sativa), 5'ss of exon 3
TGGAAAGAATGTGTTCCAACTGGAAGGGTTATTGGAGACCAGTCTTCAGTTGGAACCATGGAAAAGGATGAAAGGCAAATGGCAATGGCCACTGACCAAGgtggtaatgcctattttttacttcatctgtttcctgcctaaaaaatataagtttctctacaccgattgtttacagatataataaaggcaactccattacag
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TGGAAAGAATGTGTTCCAACAGGAAGGGTCATTTCTGACCAATCTTCTGGTGGAACTTTGGAAAAAGATGAAAGACAGAGTGCGATTGCCGCTGACCAAGgtggtgatgattactgcctaccttgtttcatttgtgcctaaaaagtataagcttctctacatcaattgttttcag--------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211521869|gb|FK965545.1|FK965545EST: TGGAACCATGGAAAAGGATGAAAGGCAAATGGCAATGGCCACTGACCAAG TGAGCCCTAGGTCACAGGTGTCTAGGACAAGCAGCGGASSN-CAGCTGGTT
genomic: TGGAACCATGGAAAAGGATGAAAGGCAAATGGCAATGGCCACTGACCAAGgtggtaatgc ... tccattacagTGAGCCCTAGGTCACAGGTGTCTAGGACAAGCAGCGGAGCGGCAGCTGGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGAAAGAATGTGTTCCAACTGGAAGGGTTATTGGAGACCAGTCTTCAGTTGGAACCATGGAAAAGGATGAAAGGCAAATGGCAATGGCCACTGACCAAGgtggtaatgcctattttttacttcatctgtttcctgcctaaaaaatataagtttctctacaccgattgtttacagatataataaaggcaactccattacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG