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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACAATATCCAAAATTTGGTCGATCACTTTCATGAGCGTGGTGTCTTTATAGTTCAATATTTCTCAGgtaaataatgtggatttactttttgtggaggtgttctttttgcaatcgaataagtgctgactaaattacaagccacgatttcagcataatggagggagag...

Basic information

species Zea mays
transcript GRMZM2G325504_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G325504_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os05g50170.1 (Oryza sativa), 5'ss of exon 8
ATACAATATCCAAAATTTGGTCGATCACTTTCATGAGCGTGGTGTCTTTATAGTTCAATATTTCTCAGgtaaataatgtggatttactttt--tgtggaggtgttctttttgcaatcgaataagtgctgactaaattacaagccacgatttcagca-taatggagggagag-----
|||||| ||  |||||||||| ||||| || ||||| ||||||  |||||  ||||||||||||||||||||  | |||   | |||||||  | |||| |||||  || | |  ||   ||| |  | | || |  || |  ||  | |   | | | ||| |  |         
ATACAACATTGAAAATTTGGTTGATCATTTCCATGAACGTGGT--CTTTACCGTTCAATATTTCTCAGgtaa-cagtgtaactgtacttttgatatggaagtgttgcttctactttcct-taattcttaattaga--actatacaaaactcaggaacttatgaaatgccttttcag