1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTCTATGATGTCACTCCTTATGTAGAGGAACATCCAGGCGGAGATGCCATTCTAAATAATGCTGGGGGTGATTCCACGGAGGGCTTTTTTGGgtttgtaacttatattgcttctttatacctcatatcatgctctgtcgtagcctcattggttcagcacttcactgccttttttttttctcgaacacgcagg...
species | Zea mays |
transcript | GRMZM2G325026_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GATGCCATTCTAAATAATGCTGGGGGTGATTCCACGAAGGGCTTTTTTGG GCCACAGCATGGCACTAGGGTCTTCGATATCATCGAGGATTEST: gi|60353025|gb|DN219998.1|DN219998
genomic: GATGCCATTCTAAATAATGCTGGGGGTGATTCCACGGAGGGCTTTTTTGGgtttgtaact ... ggatccacagGCCACAGCATGGCACTAGGGTCTTCGATATCATCGAGGATT
EST: GATGCCATTCTAAATAATGCTGGGGGTGATTCCACGGAGGGCTTTTTTGG GCCACAGCATGGCACTAGGGTCTTCGATATCATCGAGGATTTCTGCATCGGEST: gi|18175201|gb|BM350589.1|BM350589
genomic: GATGCCATTCTAAATAATGCTGGGGGTGATTCCACGGAGGGCTTTTTTGGgtttgtaact ... ggatccacagGCCACAGCATGGCACTAGGGTCTTCGATATCATCGAGGATTTCTGCATCGG
EST: GATGCCATTCTAAATAATGCTGGGGGTGATTCCACGGAGGGCTTTTTTGG GCCACAGCATGGCACTAGGGTCTTAAATATCATCGAGGATTTCTGCATCGGEST: gi|113794810|gb|DW910479.1|DW910479
genomic: GATGCCATTCTAAATAATGCTGGGGGTGATTCCACGGAGGGCTTTTTTGGgtttgtaact ... ggatccacagGCCACAGCATGGCACTAGGGTCTTCGATATCATCGAGGATTTCTGCATCGG
EST: TTCCACGGAGGGC-TTTTTGG GCCACAGCATGGCACTAGGGTCTTCGATATCATCGAGGATTTCTGCATCGG
genomic: TTCCACGGAGGGCTTTTTTGGgtttgtaact ... ggatccacagGCCACAGCATGGCACTAGGGTCTTCGATATCATCGAGGATTTCTGCATCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTATGATGTCACTCCTTATGTAGAGGAACATCCAGGCGGAGATGCCATTCTAAATAATGCTGGGGGTGATTCCACGGAGGGCTTTTTTGGgtttgtaacttatattgcttctttatacctcatatcatgctctgtcgtagcctcattggttcagcacttcactgccttttttttttctcgaacacgcagg
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