Sequence
atgc intronic sequence ATGC exonic sequenceTCTCAAATATGAAAATGATGCTGGCAAGAAGGAAATTCAGCTGCAGCTTGAGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagcttaattgtgctttgttgctcattcatgtttgtaggaacacagtttcttaatgattgatgatgcaattactattggtcttttatttggcttc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G324314_T05 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os11g06750.1 (Oryza sativa), 5'ss of exon 4
TCTCAAATATGAAAATGATGCTGGCAAGAAGGAAATTCAGCTGCAGCTTGAGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagcttaattgtgctttgttg-ctcat-tcatgtttgtaggaacacagtttcttaatgattgatgatgcaattactattggtcttttatttggcttc--------------------
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TCTCAAGTATGATAGCGATGCCGGCAAGAAGGAAATCCAAATGCAGCTTGAGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacctactgttattttactatcttgtattttgagcccttctattcagttaattggatggtaaccatgtgctgtaaattgtttgttcattctcattctaaatctttatgtgcttcag
upper sequence: GRMZM2G324314_T05 (Zea mays), 5'ss of exon 4
lower sequence: AT1G43170.7 (Arabidopsis thaliana), 5'ss of exon 4
TCTCAAATATGAAAATGATGCTGGCAAGAAGGAAATTCAGCTGCAGCTTGAGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagcttaattgtgctttgttgctcatt-catgtttgtaggaacacagtttcttaatgattgatg-atgcaattactattggtcttttatttggcttc
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TAAGCAGTATGACAGTGAGGATGGCAAGAAGGGTATTCAGGCTCAGCTTGAGAAGATGAAGAAGTACGCTACTGTCATCCGTGTTTTGGCTCACACTCAGgtaagtttgcttattgaatggaagtgtatatcataaactcttctgcac-tacgttcttactgacaattctatgtgacctctaattacag-------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116821347|gb|EC864647.1|EC864647EST: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATT
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tatattttagATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTCAAATATGAAAATGATGCTGGCAAGAAGGAAATTCAGCTGCAGCTTGAGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagcttaattgtgctttgttgctcattcatgtttgtaggaacacagtttcttaatgattgatgatgcaattactattggtcttttatttggcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA