Sequence
atgc intronic sequence ATGC exonic sequenceCATGGTCAAAGACAAGGACAACGTGACCTTGGAGGATGTGCTGCAGCCTGGAACAAACATGCTTGCTGCTGGCTACTGCATGTACGGGAGTTCATGCACGgtaactatctattgctagatccactttagtttttacgccccggccggccaattcacttcgactcgtcttataactgtatcgactgccgttaccaactatggcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G322953_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os05g36270.3 (Oryza sativa), 5'ss of exon 5
CATGGTCAAAGACAAGGACAACGTGACCTTGGAGGATGTGCTGCAGCCTGGAACAAACATGCTTGCTGCTGGCTACTGCATGTACGGGAGTTCATGCACGgtaactatctattgctagatccactttagtttttacgccccggccggccaattcacttcgactcgtcttataactgtatcgactgccgttaccaactatggcag
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CATGATTAAAGACAAGGACAACGTGACTTTGGACGATGTACTGCAACCTGGAACAGACATGCTTGCTGCTGGCTACTGCATGTACGGGAGTTCATGCACGgtaaccatgtcat-ctgaatccattt------------ccccttcagatatatcacatgtactctcttcctaa----atagact-tggtt--ctggtatgacag
upper sequence: GRMZM2G322953_T03 (Zea mays), 5'ss of exon 4
lower sequence: PP1S1_300V6.2 (Physcomitrella patens), 5'ss of exon 6
CATGGTCAAAGACAAGGACAACGTG-ACCTTGGAGGATGTGCTGCAGCCTGGAACAAACATGCTTGCTGCTGGCTACTGCATGTACGGGAGTTCATGCACGgtaa---ctatctattgctagatccactttagtttttacgccccggccggccaattcac-ttcgactcgtcttataactgtatcgactgccgttaccaactatggcag
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TATGCTCAAGGA-AGGAGCATCAGGCACTGTTGAGGATGTGTTGCAGCCTGGCACTGCAATGCTTGCTGCTGGCTATTGTATGTATGGAAGTTCATGCACCgtaaggactctgcccttgtgaagtgactgaattgcttaagacgtgcaattgcacttgatgtttaagcaatcaccgaacttggatgacta--atcgtcaaata------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32861683|gb|CF001365.1|CF001365EST: GAACAAACATGCTTGCTGCTGGCTACTGCATGTACGGGAGTTCCTGCACG CTTGTGCTGAGCACTGGGAACGGAGTCAATGGCTTCACTCTGGATCCTTCC
genomic: GAACAAACATGCTTGCTGCTGGCTACTGCATGTACGGGAGTTCATGCACGgtaactatct ... actatggcagCTTGTGCTGAGCACTGGGAACGGAGTCAATGGCTTCACTCTCGATCCTTCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATGGTCAAAGACAAGGACAACGTGACCTTGGAGGATGTGCTGCAGCCTGGAACAAACATGCTTGCTGCTGGCTACTGCATGTACGGGAGTTCATGCACGgtaactatctattgctagatccactttagtttttacgccccggccggccaattcacttcgactcgtcttataactgtatcgactgccgttaccaactatggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT