1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATGACCTTCACTTTTTTGTCACCGCTGGAGATGATGAGAATGAGCTCATCTTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctattttctgttattactgcatatatatttgcctttgtatgtggttgttttgacgtgccgcttactgtgctttag
species | Zea mays |
transcript | GRMZM2G314679_T05 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG GGGTGATGTTGAGAAGCGGACTGCGCTTGAAAACTTGGATTTGATACTTCTEST: gi|211411155|gb|FK961654.1|FK961654
genomic: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
EST: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCTEST: gi|60356728|gb|DN223701.1|DN223701
genomic: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
EST: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCTEST: gi|32849532|gb|CD989213.1|CD989213
genomic: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
EST: ACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCTEST: gi|15323565|gb|BI478787.1|BI478787
genomic: ACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
EST: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCTEST: gi|4681229|gb|AI629899.1|AI629899
genomic: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
EST: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCTEST: gi|32908218|gb|CF013031.1|CF013031
genomic: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
EST: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCTEST: gi|87157301|gb|DY402090.1|DY402090
genomic: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
EST: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCTEST: gi|7137590|gb|AW499170.1|AW499170
genomic: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
EST: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGNTGGTCTTCTACTCAG GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCTEST: gi|211184341|gb|FL140047.1|FL140047
genomic: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
EST: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCTEST: gi|32938645|gb|CF043464.1|CF043464
genomic: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
EST: ACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCTEST: gi|4646698|gb|AI491558.2|AI491558
genomic: ACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
EST: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG GGGTGATGTTGAGAAGCGGTCTGCGCTTGAGAACTTGGATTTGATACTTCTEST: gi|5296305|gb|AI783075.1|AI783075
genomic: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
EST: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCTEST: gi|22819508|gb|BU499598.1|BU499598
genomic: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
EST: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCTEST: gi|56382683|gb|CV985352.1|CV985352
genomic: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
EST: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCTEST: gi|211184337|gb|FL140043.1|FL140043
genomic: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
EST: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCTEST: gi|211344197|gb|FL190861.1|FL190861
genomic: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
EST: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTEST: gi|62550301|gb|DN830721.1|DN830721
genomic: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACT
EST: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCTEST: gi|5928724|gb|AW055941.1|AW055941
genomic: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
EST: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCTEST: gi|5901227|gb|AW042327.1|AW042327
genomic: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
EST: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCTEST: gi|16925380|gb|BM078448.1|BM078448
genomic: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
EST: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCTEST: gi|6227104|gb|AW155808.1|AW155808
genomic: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
EST: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG GNGGTGATGTTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTEST: gi|211181938|gb|FL140036.1|FL140036
genomic: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagG-GGTGATGTT-GAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTT
EST: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG GNGTGATGTTGAGAAGCGGACTGCGCEST: gi|211184339|gb|FL140045.1|FL140045
genomic: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGC
EST: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG GAGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
genomic: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGACCTTCACTTTTTTGTCACCGCTGGAGATGATGAGAATGAGCTCATCTTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctattttctgttattactgcatatatatttgcctttgtatgtggttgttttgacgtgccgcttactgtgctttag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG