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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGGgtaacaatcttgacttgtgctaggttttggttatcagttatgttctacactgtgctatttcaaatgtgggtctgttctatgttagatggttctgtgaatt...

Basic information

species Zea mays
transcript GRMZM2G314679_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G314679_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g21250.1 (Oryza sativa), 5'ss of exon 5
GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGGgtaacaatct----tgacttgtgctaggttttggttatcagttatgttctacactgtgctatttcaaatgtgggtctgttctatgttagatggttctgtgaatt
|||||||||||||||| ||||||| || |||||  |||| ||||||||||||||||| ||||||||||| ||||| ||||||   | |    |||  | |||||  |||     | | ||| | ||||| |   |   ||  |||   |   |   |  |||  |   |  ||  ||  |  
GGGTGATGTTGAGAAGAGGACTGCACTCGAGAATCTGGACTTGATACTTCTCTGCATCGATGAAATTGTAGATGGCGGgtaatggtttcttgtgatctatgctacatttgtaccacctgtt-tcttctaaaaaatcacatg-caagcattcctgactattatacttttttttttcgtaca--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32849532|gb|CD989213.1|CD989213
EST:     GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGG                         AATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
genomic: GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGGgtaacaatct ... acttctgcagAATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
EST: gi|15323565|gb|BI478787.1|BI478787
EST:     GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTAGATGGGGG                         AATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
genomic: GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGGgtaacaatct ... acttctgcagAATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
EST: gi|4681229|gb|AI629899.1|AI629899
EST:     GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGG                         AATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
genomic: GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGGgtaacaatct ... acttctgcagAATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
EST: gi|32908218|gb|CF013031.1|CF013031
EST:     GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGG                         AATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
genomic: GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGGgtaacaatct ... acttctgcagAATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
EST: gi|32938645|gb|CF043464.1|CF043464
EST:     GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGG                         AATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
genomic: GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGGgtaacaatct ... acttctgcagAATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
EST: gi|4646698|gb|AI491558.2|AI491558
EST:     GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGG                         AATCATCCTGGAAACAGATGCAAACCCCATCGCTGGTAAGGATGCAACCAA
genomic: GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGGgtaacaatct ... acttctgcagAATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
EST: gi|16926612|gb|BM079680.1|BM079680
EST:     GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGG                         AATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
genomic: GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGGgtaacaatct ... acttctgcagAATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
EST: gi|211411154|gb|FK961653.1|FK961653
EST:     GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGG                         AATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
genomic: GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGGgtaacaatct ... acttctgcagAATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
EST: gi|211411155|gb|FK961654.1|FK961654
EST:     GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGG                         AATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
genomic: GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGGgtaacaatct ... acttctgcagAATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
EST: gi|16925380|gb|BM078448.1|BM078448
EST:     GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGG                         AATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA
genomic: GAGAACTTGGATTTGATACTTCTCTGCATTGATGAAATTGTGGATGGGGGgtaacaatct ... acttctgcagAATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAA