1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAACCATGCATAAAGATCAGAAACTCGACTGCACAGTGGTGCATTGAGCAGAACATAGAATATATTGAGGCCTGTGCTTCCAATGCTGACTTTGATAAGTgtaagttgtctcggctgtaaacctgtaactgttaagccccccccccccccccccccccccaagtttctgaactttgccattaggcttttcatatttccag...
species | Zea mays |
transcript | GRMZM2G314386_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAACATAGAATATATTGAGGCCTGTGCTTCCAATGCTGACTTTGATAAGT GTCTATCAGTGGATGGTGATAGCCAAGGCTTAGAGCGACTCCTTGGAGCTCEST: gi|71449060|gb|DR830110.1|DR830110
genomic: GAACATAGAATATATTGAGGCCTGTGCTTCCAATGCTGACTTTGATAAGTgtaagttgtc ... aaactaacagGTCTATCAGTGGATGGTGATAGCCAAGGCTTAGAGCGACTCCTTGGAGCTC
EST: GAACATAGAATATATTGAGGCCTGTGCTTCCAATGCTGACTTTGATAAGT GTCTATCAGTGGATGGTGATAGCCAAGGCTTAGAGCGACTCCTTGGAGCTCEST: gi|76919525|gb|DV167761.1|DV167761
genomic: GAACATAGAATATATTGAGGCCTGTGCTTCCAATGCTGACTTTGATAAGTgtaagttgtc ... aaactaacagGTCTATCAGTGGATGGTGATAGCCAAGGCTTAGAGCGACTCCTTGGAGCTC
EST: GAACATAGAATATATTGAGGCCTGTGCTTCCAATGCTGACTTTGATAAGT GTCTATCAGTGGATGGTGATAGCCAAGGCTTAGAGCGACTCCTTGGAGCTCEST: gi|71775328|gb|DR973206.1|DR973206
genomic: GAACATAGAATATATTGAGGCCTGTGCTTCCAATGCTGACTTTGATAAGTgtaagttgtc ... aaactaacagGTCTATCAGTGGATGGTGATAGCCAAGGCTTAGAGCGACTCCTTGGAGCTC
EST: GAACATAGAATATATTGAGGCCTGTGCTTCCAATGCTGACTTTGATAAGT GTCTATCAGTGGATGGTGATAGCCAAGGCTTAGAGCGACTCCTTGGAGCTC
genomic: GAACATAGAATATATTGAGGCCTGTGCTTCCAATGCTGACTTTGATAAGTgtaagttgtc ... aaactaacagGTCTATCAGTGGATGGTGATAGCCAAGGCTTAGAGCGACTCCTTGGAGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACCATGCATAAAGATCAGAAACTCGACTGCACAGTGGTGCATTGAGCAGAACATAGAATATATTGAGGCCTGTGCTTCCAATGCTGACTTTGATAAGTgtaagttgtctcggctgtaaacctgtaactgttaagccccccccccccccccccccccccaagtttctgaactttgccattaggcttttcatatttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccccc