Sequence
atgc intronic sequence ATGC exonic sequenceAAATGCAAAGAAGGCTCCTAATGTCCCTCTTGGAGATATTGTAAAGTCAAGGCTCAAACAATTTTCTAGGATGAATAGATTCAAAAGAAGGGCTCTAAGGgtctgtatcttgctctattgaattttttcatcctggtctggtattttattctcccttatctctgccatatcaattcaggattgactgataagattaggtgtatgtgtttgactag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G311220_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g61590.1 (Oryza sativa), 5'ss of exon 4
AAATGCAAAGAAGGCTCCTAATGTCCCTCTTGGAGATATTGTAAAGTCAAGGCTCAAACAATTTTCTAGGATGAATAGATTCAAAAGAAGGGCTCTAAGGgtctgtatcttgctctattgaattttttcatcctggtctggtattttattctcccttatctctgccatatcaattcaggattgactgataagattaggtgt-atgtgtttgactag
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AAATGCTAAGAAAGCTCCAAATGTTCCTCTTGGAGATATTGTGAAGTCAAGGCTCAAACAATTTTCTAGAATGAATAGATTCAAAAGAAGAGCACTAAGGgtctgtatcttgctctctt-aacctttccatcttgttccgatgcttt---ccaccaagtatctaccatgtcaatctactgttgagtgacaaaaacttatgttgggtatctgactag
upper sequence: GRMZM2G311220_T03 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA18G43160.1 (Glycine max), 5'ss of exon 6
AAATGCAAAGAAGGCTCCTAATGTCCCTCTTGGAGATATTGTAAAGTCAAGGCTCAAACAATTTTCTAGGATGAATAGATTCAAAAGAAGGGCTCTAAGGgtctgtatcttgctctattgaattttttcatcctggtctggtattttattctcccttatctctgccatatcaattcaggattgactgataagattaggtgtatgtgtttgactag
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-AATGCTAAGAAGGCTCCTAATGTTCCACTTGGAGATGTTGTCAAGTCAAGGCTTAAGCAATTTTCAATGATGAACAGATTCAAAAGAAAAGCCCTTAGGGttagttcactgcatctctgg----taatatcttaagcca----tttcttttacagtatgtcagagctaa-gattttacatttgtaaacagg-----------------------
upper sequence: GRMZM2G311220_T03 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA07G18310.1 (Glycine max), 5'ss of exon 4
AAATGCAAAGAAGGCTCCTAATGTCCCTCTTGGAGATATTGTAAAGTCAAGGCTCAAACAATTTTCTAGGATGAATAGATTCAAAAGAAGGGCTCTAAGGgtctgtatcttgctctattga--attttttcatcc--tggtctggtattttattctcccttatctctgccatatcaattcaggattgactgataagattaggtgtatgtgtttgactag
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AAATGCTAAGAAGGCTCCTAATGTTCCACTTGGAGATGTTGTCAAGTCAAGGCTTAAGCAATTTTCGATGATGAACAGATTCAAAAGAAAAGCCCTTAGGgttagttcactgcatctctggtgatatcttaagccattgcttttacagtatgtcagagctaagattttatatttgtatacag-------------------------------------
upper sequence: GRMZM2G311220_T03 (Zea mays), 5'ss of exon 4
lower sequence: AT3G51850.1 (Arabidopsis thaliana), 5'ss of exon 4
AAATGCAAAGAAGGCTCCTAATGTCCCTCTTGGAGATATTGTAAAGTCAAGGCTCAAACAATTTTCTAGGATGAATAGATTCAAAAGAAGGGCTCTAAGGgtctgtatcttgctctattgaattttttcatcctggtctggtattttattctcc-cttatctctgccatatcaattcaggattgactgataagattaggtgtatgtgtttgactag
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GAACGCAAAGAAAGCTCCCAATGTTCCTCTTGGAGATGTTGTGAAGTCGAGGTTGAAGCAATTTTCAGTGATGAACCGATTCAAGAGAAAAGCTTTAAGGgtttgttta----tctgataaactctcat-tcttaattacttgcatgagtcacttcttaaacggaagatatctttactaatcttattcaaaccag---------------------
upper sequence: GRMZM2G311220_T03 (Zea mays), 5'ss of exon 4
lower sequence: Vv08s0105g00390.t01 (Vitis vinifera), 5'ss of exon 4
AAATGCAAAGAAGGCTCCTAATGTCCCTCTTGGAGATATTGTAAAGTCAAGGCTCAAACAATTTTCTAGGATGAATAGATTCAAAAGAAGGGCTCTAAGGgtctgtatcttgctctattgaattttttcatcctggtctggt-attttattctcccttatctctgccatatcaattcaggattgactgataagattaggtgtatgtgtttgactag
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GAATGCTAAAAAAGCTCCAAATGTTCCTCTTGGAGATGTTGTCAAGGCAAGGCTTAAGCAGTTTTCAATGATGAACAGATTCAAAAGAAAGGCCCTGAGGgt--------tggttcattgattactcctatgcatttttaatcatccaattatgtttgctctccattttaaaaatact---ttaaatgatattcttatgtag--------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60338816|gb|DN205789.1|DN205789EST: GGCTCAAACAATTTTCTAGGATGAATAGATTCAAAAGAAGGGCTCTAAGG GTCATTGCTGATCATTTGTCTGCTGAGGAAGTTGAGGATATAAAGGATATG
genomic: GGCTCAAACAATTTTCTAGGATGAATAGATTCAAAAGAAGGGCTCTAAGGgtctgtatct ... gtttgactagGTCATTGCTGATCATTTGTCTGCTGAGGAAGTTGAGGATATAAAGGATATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAATGCAAAGAAGGCTCCTAATGTCCCTCTTGGAGATATTGTAAAGTCAAGGCTCAAACAATTTTCTAGGATGAATAGATTCAAAAGAAGGGCTCTAAGGgtctgtatcttgctctattgaattttttcatcctggtctggtattttattctcccttatctctgccatatcaattcaggattgactgataagattaggtgtatgtgtttgactag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG