1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AAATGCAAAGAAGGCTCCTAATGTCCCTCTTGGAGATATTGTAAAGTCAAGGCTCAAACAATTTTCTAGGATGAATAGATTCAAAAGAAGGGCTCTAAGGgtctgtatcttgctctattgaattttttcatcctggtctggtattttattctcccttatctctgccatatcaattcaggattgactgataagattaggtgtatgtgtttgactag
species | Zea mays |
transcript | GRMZM2G311220_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGCTCAAACAATTTTCTAGGATGAATAGATTCAAAAGAAGGGCTCTAAGG GTCATTGCTGATCATTTGTCTGCTGAGGAAGTTGAGGATATAAAGGATATGEST: gi|211215229|gb|FL184707.1|FL184707
genomic: GGCTCAAACAATTTTCTAGGATGAATAGATTCAAAAGAAGGGCTCTAAGGgtctgtatct ... gtttgactagGTCATTGCTGATCATTTGTCTGCTGAGGAAGTTGAGGATATAAAGGATATG
EST: AATAGATTCAAAAGAAGGGCTCTAAGG GTCATTGCTGATCATTTGNCTGCTGAGGAAGTTGAGGATATAAAGGATATGEST: gi|78119680|gb|DV538064.1|DV538064
genomic: AATAGATTCAAAAGAAGGGCTCTAAGGgtctgtatct ... gtttgactagGTCATTGCTGATCATTTGTCTGCTGAGGAAGTTGAGGATATAAAGGATATG
EST: GGCTCAAACAATTTTCTAGGATGAATAGATTCAAAAGAAGGGCTCTAAGG GTCATTGCTGATCATTTGTCTGCTGAGGAAGTTGAGGATATAAAGGATATGEST: gi|211215232|gb|FL184710.1|FL184710
genomic: GGCTCAAACAATTTTCTAGGATGAATAGATTCAAAAGAAGGGCTCTAAGGgtctgtatct ... gtttgactagGTCATTGCTGATCATTTGTCTGCTGAGGAAGTTGAGGATATAAAGGATATG
EST: TCTAGGATGAATAGATTCAAAAGAAGGGCTCTAAGG GTCATTGCTGATCATTTGHCTGCTGAGGAAGTTGAGGATATAAAGGATATG
genomic: TCTAGGATGAATAGATTCAAAAGAAGGGCTCTAAGGgtctgtatct ... gtttgactagGTCATTGCTGATCATTTGTCTGCTGAGGAAGTTGAGGATATAAAGGATATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATGCAAAGAAGGCTCCTAATGTCCCTCTTGGAGATATTGTAAAGTCAAGGCTCAAACAATTTTCTAGGATGAATAGATTCAAAAGAAGGGCTCTAAGGgtctgtatcttgctctattgaattttttcatcctggtctggtattttattctcccttatctctgccatatcaattcaggattgactgataagattaggtgtatgtgtttgactag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG