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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCAAGTGAAGAAGAAACAGTTCTTTCGAAACTTCATTACTATTACACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTGgtaggttcggtcccaaatttcacttttaacatgattatatgcttctggatttctgcctgcctaactcacatttgatctcaatag

Basic information

species Zea mays
transcript GRMZM2G311165_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G311165_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os11g42790.1 (Oryza sativa), 5'ss of exon 3
GTTCCAAGTGAAGAAGAAACAGTTCTTTCGAAACTTCATTACTATTACACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTGgtaggttcggtcccaaatttcacttttaacatgattatatgcttctggatttctgcctgcctaactcacatttgatctcaatag
||||||||| ||||||||||| || || || |||||||| ||||||||  ||||||||||  |||| ||| | |||||||| | |||||| ||||| |||| |||   | ||    || |  ||| || ||   || | ||| ||   |  |  ||  |   |  |||||  ||| ||    
GTTCCAAGTTAAGAAGAAACAATTTTTCCGCAACTTCATGACTATTACGTTGTTTGGTGCGATTGGGACCCTAATCTCTTTCAGTGTAATTTCCCTCGgtaagttgttttcct--ctttaaattttacctggc-atgttcttttgtgctcatctctctcactcgtacattccatcacag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116824436|gb|EC868056.1|EC868056
EST:     ACTGTTTGGTGCAGTTGGCACCTTAATCTCTTTTACTGTAATATCCCTTG                         GCGCTCTAGGACTAATATC-AGGCTTAATATCGGCGCACTTGAACTGGGAG
genomic: ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTGgtaggttcgg ... atctcaatagGCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
EST: gi|19057804|gb|BM736471.1|BM736471
EST:     TGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTG                         GCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
genomic: TGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTGgtaggttcgg ... atctcaatagGCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
EST: gi|116820150|gb|EC863342.1|EC863342
EST:     -CTGTTTGGTGCAG-TGGCACCTTGATCTCTTTTAC-GTAATATCCCTTG                         GCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
genomic: ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTGgtaggttcgg ... atctcaatagGCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
EST: gi|32831753|gb|CD971431.1|CD971431
EST:     ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCTTTG                         GCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
genomic: ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTGgtaggttcgg ... atctcaatagGCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG