Sequence
atgc intronic sequence ATGC exonic sequenceCTCCTGTTGAGATGGATGTTGATGGTTCCAAAGTTTCTGTCCTTTATCTAGACACTGAAGGGTTTGAAAGTGTTGGGAAATCAAATGTGTATGATGATAGgtttgtgccgagaaacgaactcattccgatttactttttcttggagaattaactattagaatgttttctttctttggtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G305254_T07 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g58240.1 (Oryza sativa), 5'ss of exon 5
CTCCTGTTGAGATGGATGTTGATGGTTCCAAAGTTTCTGTCCTTTATCTAGACACTGAAGGGTTTGAAAGTGTTGGGAAATCAAATGTGTATGATGATAGgtttgtgccgagaaacgaactca--------ttccgatttactttttct----tggagaattaac-----tattagaatgttttc-----tttctttggtag---
| |||||||| ||||| |||||||||| ||||| ||||||||||| || || |||||||| ||||| ||||||||||| |||||||| ||||||||||||| |||| ||||| | | | |||| ||||||||||||| | || | | || | || | || ||| ||||||| || |
CACCTGTTGAAATGGACATTGATGGTTCAAAAGTGTCTGTCCTTTACCTTGATACTGAAGGATTTGAGAGTGTTGGGAAGTCAAATGTATATGATGATAGgtctgtgtgcagaaatggaatgtgaagaagtttcccatttactttttctatgatagaaaggttacattgttgttggtatcattttattcatttcttttgtggcag
upper sequence: GRMZM2G305254_T07 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA10G03660.1 (Glycine max), 5'ss of exon 5
CTCCTGTTGAGATGGATGTTGATGGTTCCAAAGTTTCTGTCCTTTATCTAGACACTGAAGGGTTTGAAAGTGTTGGGAAATCAAATGTGTATGATGATAGgtttgtgccgagaaacgaactcattccgatttactttttcttggagaattaactattagaatgttttctttctttggtag---------
| ||| | || ||||| || |||| | | ||||||| |||| || || || ||||| ||||||||||||||||| || ||||| ||||||||| ||| ||| | | | ||||| | || | || | | | | | || || || || | || | |
CACCTATAGATTTGGATATTAATGGAGTAAGAACTTCTGTCTTTTACCTTGATACAGAAGGATTTGAAAGTGTTGGGAAGTCCAATGTATATGATGATCGgtaattgctttcagatca-tgcattctgtgttctgtgttgaatcatatatgattgtttagttggctttttcttgtgtttgcttttgcag
upper sequence: GRMZM2G305254_T07 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA02G16130.1 (Glycine max), 5'ss of exon 4
CTCCTGTTGAGATGGATGTTGATGGTTCCAAAGTTTCTGTCCTTTATCTAGACACTGAAGGGTTTGAAAGTGTTGGGAAATCAAATGTGTATGATGATAGgtttgtgccgagaaacgaactcattccgatttactttttcttggagaattaactattagaatgttttctttctttggtag---------
| ||| | || ||||| || |||| | | ||||||| |||| || || || ||||| ||||||||||||||||| || ||||| ||||||||| ||| ||| | | | ||||| | || | || | | | | | || | || || | || | |
CACCTATAGATTTGGATATTAATGGAGTAAGAACTTCTGTCTTTTACCTTGATACAGAAGGATTTGAAAGTGTTGGGAAGTCCAATGTATATGATGATCGgtaattgctttcagatca-tgcattctgtgttctgtgttgaatcatatatgattgtttagttagctttttgttgtgtttgcttttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|160481497|gb|EY254329.1|EY254329EST: GACACTGAAGGGTTTGAAAGTGTTGGGAAATCAAATGTGTATGATGATAG GATATTTGCTTTGGCGACTGTCTTAAGCTCGGTCCTTATCTACAACCTTCC
genomic: GACACTGAAGGGTTTGAAAGTGTTGGGAAATCAAATGTGTATGATGATAGgtttgtgccg ... tctttggtagGATATTTGCTTTGGCGACTGTCTTAAGCTCGGTCCTTATCTACAACCTTCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTCCTGTTGAGATGGATGTTGATGGTTCCAAAGTTTCTGTCCTTTATCTAGACACTGAAGGGTTTGAAAGTGTTGGGAAATCAAATGTGTATGATGATAGgtttgtgccgagaaacgaactcattccgatttactttttcttggagaattaactattagaatgttttctttctttggtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG