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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGGGAAAGGTTCAAGAGGAGATGTTACTATATTGCCTACACTTGTTGTGAACAACCGGCAATATCGAGgtaaatattctgcaggtacacaaacttacatccactctatatgactttaacctgcaaaaggaatacag

Basic information

species Zea mays
transcript GRMZM2G303631_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G303631_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os10g20630.1 (Oryza sativa), 5'ss of exon 4
ATTGGGAAAGGTTCAAGAGGAGATGTTACTATATTGCCTACACTTGTTGTGAACAACCGGCAATATCGAGgtaaatattctgcag--------gta---cacaaactta-catccactctatatgactttaacctgcaaaaggaatacag
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||  | |||| ||         |||   |  |||| |  |||   ||||   | | ||||||||| ||||  || |   
ATTGGGAAAGGATCAAGAGGAGATGTTACTATATTGCCTACTCTTGTTGTGAACAATCGGCAATACCGAGgtaggtgttctacaaaatctgttgtaaggcttaaacctggcatttgctctggctaattttaacctggaaaactaacag--

upper sequence: GRMZM2G303631_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA11G00370.1 (Glycine max), 5'ss of exon 4
ATTGGGAAAGGTTCAAGAGGAGATGTTACTATATTGCCTACACTTGTTGTGAACAACCGGCAATATCGAGgtaaatattctgcaggtacacaaacttacatccactctatatgactttaacctgcaaaaggaatacag
||||| || || ||  |||| |||||||| ||||||||||| |||||||| || || || ||||||||||||   || |||   | |      |     |  ||       |  |  |      || ||    | |||
ATTGGAAAGGGATCGCGAGGTGATGTTACCATATTGCCTACTCTTGTTGTCAATAATCGACAATATCGAGgtttgtactctat-gctcttgtgataggtagtcatctggagttccaattctaaacagaatctttccag

upper sequence: GRMZM2G303631_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv03s0091g00740.t01 (Vitis vinifera), 5'ss of exon 4
ATTGGGAAAGGTTCAAGAGGAGATGTTACTATATTGCCTACACTTGTTGTGAACAACCGGCAATATCGAGgtaaatattctgcaggtacacaaacttacatccactctatatgactttaacctgcaaaaggaat-acag
 ||||||||||  ||||||| ||||| ||||||||||| || ||||||||||||||  | ||||||||||||   | |  |   | ||      |||| |    |   || |  |  |  |    | | | | |  |||
GTTGGGAAAGGAACAAGAGGCGATGTCACTATATTGCCCACCCTTGTTGTGAACAATAGACAATATCGAGgtt--tgtcttagtgttaatgtttcttaaaatgtcaggatgtttcccttcctaaaacatgtagttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5847202|gb|AW000281.1|AW000281
EST:     AGATGTTACTATATTGCCTACACTTGTTGTGAACAACCGGCAATATCGAG                         GGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGG
genomic: AGATGTTACTATATTGCCTACACTTGTTGTGAACAACCGGCAATATCGAGgtaaatattc ... aggaatacagGGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGG
EST: gi|5325106|gb|AI783297.1|AI783297
EST:     AGATGTTACTATATTGCCTACACTTGTTGTGAACAACCGGCAATATCGAG                         GGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGG
genomic: AGATGTTACTATATTGCCTACACTTGTTGTGAACAACCGGCAATATCGAGgtaaatattc ... aggaatacagGGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGG
EST: gi|211449604|gb|FL033165.1|FL033165
EST:     AGATGTTACTATATTGCCTACACTTGTTGTGAACAACCGGCAATATCGAG                         GGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGG
genomic: AGATGTTACTATATTGCCTACACTTGTTGTGAACAACCGGCAATATCGAGgtaaatattc ... aggaatacagGGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGG
EST: gi|5325027|gb|AI783218.1|AI783218
EST:     AGATGTTACTATATTGCCTACACTTGNTGNGAACAACCGGCAATATCGAG                         GGAAGCTTGAG
genomic: AGATGTTACTATATTGCCTACACTTGTTGTGAACAACCGGCAATATCGAGgtaaatattc ... aggaatacagGGAAGCTTGAG
EST: gi|211156293|gb|FL375842.1|FL375842
EST:     AGATGTTACTATATTGCCTACACTTGTTGTGAACAACCGGCAATATCGAG                         GGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGG
genomic: AGATGTTACTATATTGCCTACACTTGTTGTGAACAACCGGCAATATCGAGgtaaatattc ... aggaatacagGGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGG
EST: gi|32850609|gb|CD990290.1|CD990290
EST:     AGATGTTACTATATTGCCTACACTTGTTGTGAACAACCGGCAATATCGAG                         GGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGG
genomic: AGATGTTACTATATTGCCTACACTTGTTGTGAACAACCGGCAATATCGAGgtaaatattc ... aggaatacagGGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGG
EST: gi|91054221|gb|EB164639.1|EB164639
EST:     AGATGTTACTATATTGCCTACACTTGTTGTGAACAACCGGCAATATCGAG                         GGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGG
genomic: AGATGTTACTATATTGCCTACACTTGTTGTGAACAACCGGCAATATCGAGgtaaatattc ... aggaatacagGGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGG
EST: gi|211449603|gb|FL033164.1|FL033164
EST:     AGATGTTACTATATTGCCTACACTTGTTGTGAACAACCGGCAATATCGAG                         GGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGG
genomic: AGATGTTACTATATTGCCTACACTTGTTGTGAACAACCGGCAATATCGAGgtaaatattc ... aggaatacagGGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGG
EST: gi|211449602|gb|FL033163.1|FL033163
EST:     AGATGTTACTATATTGCCTACACTTGTTGTGAACAACCGGCAATATCGAG                         GGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGG
genomic: AGATGTTACTATATTGCCTACACTTGTTGTGAACAACCGGCAATATCGAGgtaaatattc ... aggaatacagGGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGG
EST: gi|211229612|gb|FL380029.1|FL380029
EST:     AGATGTTACTATATTGCCTACACTTGTTGTGAACAACCGGCAATATCGAG                         GGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGG
genomic: AGATGTTACTATATTGCCTACACTTGTTGTGAACAACCGGCAATATCGAGgtaaatattc ... aggaatacagGGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGG
EST: gi|211212797|gb|FL419176.1|FL419176
EST:     AGATGTTACTATATTGCCTACACTTGTTGT-AACAACCGGCAATATCGAG                         GGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGG
genomic: AGATGTTACTATATTGCCTACACTTGTTGTGAACAACCGGCAATATCGAGgtaaatattc ... aggaatacagGGAAGCTTGAGAGGAAAGCTGTCCTCAAAGCTATTTGTGCTGGTTTTGAGG