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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGCCTAGGACCAGTGACTACCTTGTTTCATTTGGAGAATGCATGTCCACCAGGATTTTTTCTGCTTATTTGAACAAAATTCGTGTCAAGGCACGGCAGgtacttcttgatattttcttgatttgcacagtgattcagtgagcttttcaggttatgaatgcagcagcctacaagaatttgctatagtatccctgcccta...

Basic information

species Zea mays
transcript GRMZM2G300862_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G300862_T05 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g70300.2 (Oryza sativa), 5'ss of exon 4
GACGCCTAGGACCAGTGACTACCTTGTTTCATTTGGAGAATGCATGTCCACCAGGATTTTTTCTGCTTATTTGAACAAAATTCGTGTCAAGGCACGGCAGgtacttcttgatattttcttgatttgcacagtgattcagtgagcttttcaggttatgaatgcagcagcctacaagaatttgctatagtatccctgcccta
||| | | |||||| ||||||||||||||||||||| || |||||||| ||  |||||||| |||||||||||||||||||  | || || ||||||||||||||||||   || |||||  | | | ||||||  || ||  |||   ||  | ||| |  | ||  || || |||||||| |   |||   |     |
GACACTTCGGACCACTGACTACCTTGTTTCATTTGGGGAGTGCATGTCTACACGGATTTTTGCTGCTTATTTGAACAAAATCGGAGTAAAAGCACGGCAGgtacttctttgcatattctttgtctacgcagtgaaccattgttcttcagagcatgtgattttatcaatctgcatgaatttgcaagcatataagtatttaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89759013|gb|DY687973.1|DY687973
EST:     CCAGGATTTTTTCTGCTTATTTGAACAAAATTCGTGTCAAGGCACGGCAG                         GGGCCATGTAACCAGCCTAGCTGCAAATCCCCA
genomic: CCAGGATTTTTTCTGCTTATTTGAACAAAATTCGTGTCAAGGCACGGCAGgtacttcttg ... tttgatacagGGGCCATGTAACCAGCCTAGCTGCAAATCCCCA