1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CAACCGAGTCTAAAGCAACAACTGAAAGCGTATACAGTGCTGCCTTGGCTCTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGAgtaagtaacatatatattcttcctgcgacaggcacgaacatgcatgtgttcaatagcacagatgtgatgatatgactgtcaccatgtcttttagtgctagaag
species | Zea mays |
transcript | GRMZM2G300348_T03 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGATGCTAGAAEST: gi|60344179|gb|DN211152.1|DN211152
genomic: GAATTGCGAACCAACTCACGAACATACTCCGGGATGTT-G-GA-GA-G---G-Agtaagtaaca ... gtg
EST: GAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGATGCTAGAAEST: gi|149008705|gb|EE040899.2|EE040899
genomic: GAATTGCGAACCAACTCACGAACATACTCCGGGATGTT-G-GA-GA-G---G-Agtaagtaaca ... gtg
EST: ACTCACGAACATACTCCGGGATGTTGGAGAGGATGCTAGAAEST: gi|149008705|gb|EE040899.2|EE040899
genomic: ACTCACGAACATACTCCGGGATGTT-G-GA-GA-G---G-Agtaagtaaca ... gtg
EST: ACTCACGAACATACTCCGGGATGTTGGAGAGGATGCTAGAAEST: gi|78104639|gb|DV523057.1|DV523057
genomic: ACTCACGAACATACTCCGGGATGTT-G-GA-GA-G---G-Agtaagtaaca ... gtg
EST: CTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGATGCTAGAAEST: gi|78104639|gb|DV523057.1|DV523057
genomic: CTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTT-G-GA-GA-G---G-Agtaagtaaca ... gtg
EST: CTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGATGCTAGAAEST: gi|148946927|gb|EC892211.2|EC892211
genomic: CTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTT-G-GA-GA-G---G-Agtaagtaaca ... gtg
EST: ATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGATGCTAGAAEST: gi|148946927|gb|EC892211.2|EC892211
genomic: ATTGCGAACCAACTCACGAACATACTCCGGGATGTT-G-GA-GA-G---G-Agtaagtaaca ... gtg
EST: ATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGATGCTAGAAEST: gi|71444099|gb|DR825149.1|DR825149
genomic: ATTGCGAACCAACTCACGAACATACTCCGGGATGTT-G-GA-GA-G---G-Agtaagtaaca ... gtg
EST: TGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTT-GAGAGAGA AGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGGGCTCTCTGEST: gi|71775306|gb|DR973184.1|DR973184
genomic: TGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAG-GAgtaagtaaca ... gtgctagaagAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGGGCTCTCTG
EST: CTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGATGCTAGAAEST: gi|71775306|gb|DR973184.1|DR973184
genomic: CTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTT-G-GA-GA-G---G-Agtaagtaaca ... gtg
EST: CTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGATGCTAGAAEST: gi|50325755|gb|CO520881.1|CO520881
genomic: CTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTT-G-GA-GA-G---G-Agtaagtaaca ... gtg
EST: GGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGATGCTAGAAEST: gi|50325755|gb|CO520881.1|CO520881
genomic: GGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTT-G-GA-GA-G---G-Agtaagtaaca ... gtg
EST: GGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGATGCTAGAAEST: gi|22521337|gb|BU080148.1|BU080148
genomic: GGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTT-G-GA-GA-G---G-Agtaagtaaca ... gtg
EST: CTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGATGCTAGAAEST: gi|22521337|gb|BU080148.1|BU080148
genomic: CTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTT-G-GA-GA-G---G-Agtaagtaaca ... gtg
EST: CTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGATGCTAGAAEST: gi|60338830|gb|DN205803.1|DN205803
genomic: CTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTT-G-GA-GA-G---G-Agtaagtaaca ... gtg
EST: CTCACGAACATACTCCGGGATGTTGGAGAGGATGCTAGAAEST: gi|60338830|gb|DN205803.1|DN205803
genomic: CTCACGAACATACTCCGGGATGTT-G-GA-GA-G---G-Agtaagtaaca ... gtg
EST: CTCACGAACATACTCCGGGATGTTGGAGAGGATGCTAGAAEST: gi|148958127|gb|EC904325.2|EC904325
genomic: CTCACGAACATACTCCGGGATGTT-G-GA-GA-G---G-Agtaagtaaca ... gtg
EST: TGGGAA-TGCGGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGATGCTAGAAEST: gi|148958127|gb|EC904325.2|EC904325
genomic: TGGGAATTGC-GAACCAACTCACGAACATACTCCGGGATGTT-G-GA-GA-G---G-Agtaagtaaca ... gtg
EST: TGGGAA-TGCGGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGATGCTAGAA
genomic: TGGGAATTGC-GAACCAACTCACGAACATACTCCGGGATGTT-G-GA-GA-G---G-Agtaagtaaca ... gtg
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACCGAGTCTAAAGCAACAACTGAAAGCGTATACAGTGCTGCCTTGGCTCTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGAgtaagtaacatatatattcttcctgcgacaggcacgaacatgcatgtgttcaatagcacagatgtgatgatatgactgtcaccatgtcttttagtgctagaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA