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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctccattgccttattgtcttttagtagtagttccaaattgatgttgattttacagtatggttaggctaggtctatttcctgaaaacttagtttgttaattaactgcattattcatcag

Basic information

species Zea mays
transcript GRMZM2G181151_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 4
GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctccattgccttattgtcttttagtagtagttccaaattgatgttgattttacagtatggttaggctaggtctatt-tcctgaaaactta-gtttgttaattaactgcattattcatcag
|||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||| ||||| || |||||||| || ||||| ||||||||||||||||    |    |   ||  ||  | |   |  | | |  | ||||   |    ||| || |     || | ||| || ||| ||| ||  ||||| ||||  | | | |||   ||  |  ||||
GGCCCAAAGTACCAGGAAATTGTAAACATCCGATTGGGAGATGGCACCACTCGCCGTGGCCAAGTTCTGGAAGTTGACGGTGAAAAGGCTGTTGTGCAGgttatcatttttctatttttatgaatatctttttt-gcttgagattgtattcagatttgcatttaccctatgatagttccattatccagagcacttacgttttattactgacttacttgattttcag

upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA10G42940.3 (Glycine max), 5'ss of exon 4
GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctccattgccttattgtcttttagtagtagttccaaattgatgttgattttacagtatggttaggctaggtctatttcctgaaaacttagtttgttaattaactgcattattcatcag
|| || || |  ||||| ||||| || || ||  | |||||||| || ||||| ||||| ||||| || || |||||||| |||||||||||||| |||||||        |     |||  |||| |  | ||| || |   |||   |||| || |  |  ||        || | ||| | || |    ||||     |||  ||                
GGACCCAAATTTCAAGAGATTGTTAATATTCGTTTAGGAGATGGAACTACTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAGgttagagactattccatgtataatcttcttct-gtacttgcctcttgtctttgagttgatggcttga-------agatttatgtgcttattttttaggca--taaccaaa---------------

upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA18G48280.1 (Glycine max), 5'ss of exon 4
GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctccattgccttattgtcttttagtagtagttccaa--attgatgttgattttacagtatggttag-gctag--gtctatttcctgaaaacttagtttgttaattaactgcattattcatcag
 | || ||||  ||||| ||||| ||||| ||  | |||||||| || ||||| ||||| ||||| || ||||||||||| ||||| |||||||| |||||     |        ||   |  ||       | |  || ||  |||  | ||| || |  ||  |||     | |||  |  ||| || |||| |  ||                             
-GACCCAAGTTTCAAGAGATTGTTAACATTCGCTTAGGAGATGGTACTACTCGGCGTGGACAAGTGCTAGAAGTTGATGGTGAAAAGGCTGTTGTTCAGGtctgcccagtgccttctccctaactggctagcgcatctctaatcatttgttttgcttcttgagactgggagatggtagttgcatatatcatgaagagata-----------------------------

upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA09G38110.2 (Glycine max), 5'ss of exon 4
GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctccattgccttattgtcttttagtagtagttccaa--attgatgttgattttacagtatggttag-gctag--gtctatttcctgaaaacttagtttgttaattaactgcattattcatcag
|| || ||||  ||||| ||||| || || ||  | |||||||| || ||||| ||||| ||||| || ||||||||||| ||||| |||||||| ||||||      |      ||   |  ||       | |  || ||  ||   |  || || |  ||  |||     | |||  |  ||| ||  ||  |  |                              
GGACCTAAGTTTCAAGAGATTGTTAATATTCGCTTGGGAGATGGAACTACTCGGCGTGGACAAGTGCTAGAAGTTGATGGTGAAAAGGCTGTTGTTCAGgtttgcctactgacttctccctaactgcctaacgcatctctaatcatctgttctgcttcttgagactgggagatggtagttgcatatatcacgaggagat------------------------------

upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 4
lower sequence: AT4G38510.4 (Arabidopsis thaliana), 5'ss of exon 5
GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttactt--------ctccattgccttattgtcttttagtagtagttccaaattgatgttgattttacagtatggttaggctaggtctatttcctgaaaacttagtttgttaattaactgcattattcatcag------------------
|| || || |||||||||||||| || ||||| ||||| ||||| || || || ||||||||||| || |||||||||||||| ||||||||||| |||||| |||        |||  ||   |  || |||  |  |  |   ||||  |||||| | | || |  | ||   ||    |     || |     |  | |  ||  | ||   |||||    |  ||                     
GGGCCTAAATACCAAGAAATTGTCAATATCCGTCTTGGGGATGGAACTACCCGACGTGGTCAAGTTCTCGAAGTTGATGGAGAGAAAGCTGTTGTTCAGgtttcttgaatcttcctctcttctttagttttctgctcctcttgtctccactttgatgcttaattgaacgcatttgtaaatcaatgtaatcttgcatagtcattattattcaacacactgcgaggtaaatttctttgatttgcttgtccag

upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv18s0001g01020.t01 (Vitis vinifera), 5'ss of exon 4
GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctccattgccttattgtcttttagtagtagttccaaattgatgttgattttacagtatggttaggctaggtctatttcctgaaaactt---agtttgttaattaactgcattattcatcag
|| ||||| || || || ||||| || || || |||||||||||||| || || |||||||||||| | ||||||||||| || ||||||||||||||||||     |  |     ||| || |   |  | || ||  | |  |   | |  |||| || |          ||    | |||  ||| |  |    || ||||                       
GGTCCAAAATATCAGGAGATTGTCAATATTCGCCTTGGAGATGGCACAACGCGACGTGGTCAAGTCTTAGAAGTTGATGGGGAGAAAGCTGTTGTGCAGgtt-----tttacccttttactgacacatgtttgtggtgtctatatagagcttgttttccaatgcatcct--ttattcttgttttttgacatttctaaagcttgtgc---------------------

upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 4
GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctccattgccttattgtctttta-gtagtagttccaaattgatgttgattttacagtatggttaggctaggtctatttcctgaaaacttagtttgttaattaactgcattattcatcag
|| || || || ||||| ||||| || || ||  | |||||||| || ||||| |||||||||||||| ||||||||||| || ||||| ||||||||||| | | ||   | |   |||| ||  ||| ||  |  ||     |||| ||| ||  |     ||  |||       ||   ||  | || || ||     ||                      
GGACCCAAATATCAAGAGATTGTCAATATTCGTTTGGGAGATGGAACAACTCGACGTGGTCAAGTCCTAGAAGTTGATGGTGAGAAAGCAGTTGTGCAGgtgattactgtttgg---tattctccattatgtgctcattttt--ttgaagttcatgattatacattcttaaatggtttcatatttttaaacacctatcacattt---------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33102148|gb|CF062108.1|CF062108
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|211464055|gb|FL062026.1|FL062026
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|32919410|gb|CF024222.1|CF024222
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|211464049|gb|FL062020.1|FL062020
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|33102006|gb|CF061966.1|CF061966
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTTTGAAGGAACTTCTGAAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|211045587|gb|FL062119.1|FL062119
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         G-TTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|31664290|gb|CD573015.1|CD573015
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|211474170|gb|FL062078.1|FL062078
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|32908718|gb|CF013531.1|CF013531
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|33100953|gb|CF060913.1|CF060913
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|211223693|gb|FL399500.1|FL399500
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTT-GAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|32945519|gb|CF050338.1|CF050338
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACANCCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|211279000|gb|FL407011.1|FL407011
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTT-GAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|211469118|gb|FL062056.1|FL062056
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|32933270|gb|CF038082.1|CF038082
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTTTAAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|211476688|gb|FL062089.1|FL062089
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|211466586|gb|FL062037.1|FL062037
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|32944897|gb|CF049716.1|CF049716
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|211131888|gb|FL371457.1|FL371457
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|211471640|gb|FL062065.1|FL062065
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|8367004|gb|BE049949.1|BE049949
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTTTGAAGGAACTTCTGGAATAGACAACAAATAC
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATAC
EST: gi|211332062|gb|FL381794.1|FL381794
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|32851420|gb|CD991101.1|CD991101
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|211124910|gb|FL425297.1|FL425297
EST:     TCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGGTGCAG                         GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTT
genomic: TCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTG-TGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTT
EST: gi|33100666|gb|CF060626.1|CF060626
EST:     ATCGCCGTGGTCAAGTCCTGGAAGTTGATGGCGAAAAAGCTGTTGTGCAG                         GTCTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|211461534|gb|FL062016.1|FL062016
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|32846162|gb|CD985843.1|CD985843
EST:     CTCGCCGT-GTCAAGTCC-TGAAGTTGATGGAGAAAAAGCTGTTG-GCAG                         G-TTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|211045584|gb|FL062116.1|FL062116
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|211132918|gb|FL391883.1|FL391883
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTT-GAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|211029340|gb|FL373997.1|FL373997
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|32933397|gb|CF038209.1|CF038209
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|9953932|gb|BE640515.1|BE640515
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTACAG                         GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|33100729|gb|CF060689.1|CF060689
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|211172669|gb|FL375066.1|FL375066
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTT-GAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|211464053|gb|FL062024.1|FL062024
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|211439866|gb|FL422480.1|FL422480
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|32942779|gb|CF047598.1|CF047598
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|211427007|gb|FL427232.1|FL427232
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|13389395|gb|BG462701.1|BG462701
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|211034220|gb|FL370384.1|FL370384
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|211459002|gb|FL061993.1|FL061993
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|211332674|gb|FL416300.1|FL416300
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTT-GAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|211466587|gb|FL062038.1|FL062038
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTT-GAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|32931129|gb|CF035941.1|CF035941
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCGGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|211466593|gb|FL062044.1|FL062044
EST:     TCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCCTGTTGTGCAG                         GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: TCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAG-CTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|211466594|gb|FL062045.1|FL062045
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|211448189|gb|FL410292.1|FL410292
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTT
EST: gi|24462502|gb|BM660033.1|BM660033
EST:     CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAG                         GTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTTGCAGTT
genomic: CTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGT-GCAGTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 768

GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 818

GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 508

GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 883

GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctc ... tattcatcagGTTTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACTCGCCGTGGTCAAGTCCTTGAAGTTGATGGAGAAAAAGCTGTTGTGCAGgttacttctccattgccttattgtcttttagtagtagttccaaattgatgttgattttacagtatggttaggctaggtctatttcctgaaaacttagtttgttaattaactgcattattcatcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT