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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTCATACTGACTCCATTTGCTATAGCTATGGAAGGCCCTCAAATGTGGGCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaagaatttaatatttacagttttccttgcatagttgtcaagtatggtctccactcacattcgatgagatggctcgaaacacttcgggcatgttt...

Basic information

species Zea mays
transcript GRMZM2G180720_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G180720_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os08g08840.2 (Oryza sativa), 5'ss of exon 4
TGGTCATACTGACTCCATTTGCTATAGCTATGGAAGGCCCTCAAATGTGGGCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaagaatttaa------tatt-tacagttttccttgcatagttgtcaagt-atggtctccactcacattcgatgagatggctcgaaacacttcgggcatgttt
| |||||||| || ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||| ||  |||       ||  |  | |||| |||    | |||  |  |  | | |   | |    | |  |    |  |     |||  || |        
TTGTCATACTCACACCATTCGCTATCGCTATGGAGGGCCCTCAAATGTGGGCTGCTGGTTGGCAAAAGGCTCTTGCGGAAGTTGGTCCCAATGTTGTCTGgtaagcaataaaataaaccaagcatcctttaatttttcttcagcaattgctattttgtagcccgtagttttgtac--ttgtgttacataggacaactcagaa------

upper sequence: GRMZM2G180720_T02 (Zea mays), 5'ss of exon 4
lower sequence: AT1G61800.1 (Arabidopsis thaliana), 5'ss of exon 3
TGGTCATACTGACTCCATTTGCTATAGCTATGGAAGGCCCTCAAATGTGGGCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgta--aacaagaatttaatatttacagttttccttgcatagttgtcaagtatggtctcca-ctcacatt-cgatgagatggctcgaaacacttcgggcatgttt--------------------------------------------------------------
| || || || ||||||||| |||| ||  ||||||| ||||||||||||||||||||||||||||| ||  || |  |||| ||||| ||  ||||||||||  | | | ||   || ||  | | | ||   |   | |||      ||| | ||||| |||| ||  | ||||| ||| | |  | |  | |     |||                                                               
TTGTGATCCTCACTCCATTTTCTATTGCCGTGGAAGGTCCTCAAATGTGGGCTGCTGGTTGGCAAAATGCGGTTTCTCAAGTCGGACCAAACTTTGTCTGgtatgatctaaaaaccaa-atcaataatctttaattgtttgttaagttttatagactccaactcaaatgactatgag-tggattggtatatattgctttagttcccttctaacttaagatataagattctaacttaatgtgttgtttttgttttttgaatcaatag

upper sequence: GRMZM2G180720_T02 (Zea mays), 5'ss of exon 4
lower sequence: AT4G03950.1 (Arabidopsis thaliana), 5'ss of exon 5
TGGTCATACTGACTCCATTTGCTATAGCTATGGAAGGCCCTCAAATGTGGGCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaagaatttaatatttacagttttccttgcatag-------ttgtcaagtatggtctccactcacattcgatgagatggctcgaaacacttcgggcatgttt
   ||||  | ||||| || || |   || ||||||| || ||||||||||||| |||||||||||| | | |  |  || | ||||| ||  |||||| ||||      ||| |   | |||| |         | |        | |   |   || | |  |  |   |  | | |  ||  || |||   ||       |   
---TCATTGTTACTCCTTTCGCCAATTCTGTGGAAGGTCCCCAAATGTGGGCTGATGGTTGGCAAAACGATGTCTCT-AAATCGGACCAAACTTTGTCTAGTAAgtttatattgatgttgtacaatacaaaagagacaaaaaaaattcgaagaagttgatttaaaaccttgtaaggt-atttgattctaaatgtttgaattcag---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76908644|gb|DV163027.1|DV163027
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|67042737|gb|CO468992.1|CO468992
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGNTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|60396004|gb|DN228874.1|DN228874
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|60345607|gb|DN212580.1|DN212580
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|76923750|gb|DV169643.1|DV169643
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTTTG                         GTGGATTGCTGCACAGAGCGTGTTTTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|211235246|gb|FL454385.1|FL454385
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|71440959|gb|DR822009.1|DR822009
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|4827719|gb|AI668411.1|AI668411
EST:     GCTGCTGGTTGGCAAAAGGTTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTCCCGCTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|211039687|gb|FL176198.1|FL176198
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|84976998|gb|DW475420.1|DW475420
EST:     GGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|14208320|gb|BG841998.1|BG841998
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|211127527|gb|FL066343.1|FL066343
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|60348620|gb|DN215593.1|DN215593
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|33102249|gb|CF062209.1|CF062209
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|211127528|gb|FL066344.1|FL066344
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAAAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCCAGGTGTCCC
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACC-AGGTGTCC-
EST: gi|16925074|gb|BM078142.1|BM078142
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|33771219|gb|CF273398.1|CF273398
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|60344400|gb|DN211373.1|DN211373
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|4647070|gb|AI622145.1|AI622145
EST:     GCTGCTGGTTGGCAAAAGGTTCTTGCANAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCNCAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|211128448|gb|FL066345.1|FL066345
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|60353891|gb|DN220864.1|DN220864
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|67040435|gb|CO466690.1|CO466690
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|16918835|gb|BM073919.1|BM073919
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTCCCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|211039689|gb|FL176200.1|FL176200
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|29947343|gb|CB816605.1|CB816605
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|78084229|gb|DV512622.1|DV512622
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|211039688|gb|FL176199.1|FL176199
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|8930246|gb|BE225010.1|BE225010
EST:     TGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: TGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|32920065|gb|CF024877.1|CF024877
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|91868370|gb|EB400011.1|EB400011
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: gi|5030714|gb|AI714908.1|AI714908
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG                         GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 169

TGGTCATACTGACTCCATTTGCTATAGCTATGGAAGGCCCTCAAATGTGGGCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTACATGTCTCTCGATCAGATTTCTCCATTGACATTCAGCATTGGCAATACA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 425

TGGTCATACTGACTCCATTTGCTATAGCTATGGAAGGCCCTCAAATGTGGGCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTACATGTCTCTCGATCAGATTTCTCCATTGACATTCAGCATTGGCAATACA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 588

TGGTCATACTGACTCCATTTGCTATAGCTATGGAAGGCCCTCAAATGTGGGCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTACATGTCTCTCGATCAGATTTCTCCATTGACATTCAGCATTGGCAATACA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 408

TGGTCATACTGACTCCATTTGCTATAGCTATGGAAGGCCCTCAAATGTGGGCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTACATGTCTCTCGATCAGATTTCTCCATTGACATTCAGCATTGGCAATACA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGTCATACTGACTCCATTTGCTATAGCTATGGAAGGCCCTCAAATGTGGGCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaagaatttaatatttacagttttccttgcatagttgtcaagtatggtctccactcacattcgatgagatggctcgaaacacttcgggcatgttt

- - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT