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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACCGCGCTGCTGTATGCCCCAGTGGATCCTGCAGAGTCATTGAAGTTCCGGAGGTTGCATGTTGTCTCCAGCCAGTGATTAACATAATCCCATTACAGgtttgtttgtctaattaagcttgttctgtcatctgtttttttttggtacagttcactgttcactgaacagattctgctgtttttttttggttcag

Basic information

species Zea mays
transcript GRMZM2G180155_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G180155_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os11g03900.1 (Oryza sativa), 5'ss of exon 10
CCACCGCG-CTGCTGTATGCCCCAGTGGATCCTGCAGAGTCATTGAAGTTCCGGAGGTTGCATGTTGTCTCCAGCCAGTGATTAACATAATCCCATTACAGgtttgt---ttgtctaattaagcttgttctgtca---tctgtttttttttggtacagttcactgttcactgaacagattc------------tgctgtttttttttggttcag
    |||  |||| || ||||| |||||||| ||||| || ||||||||||| ||||| ||    |||||||||||||||||||||||||| || |||||||||||    || | | | |    |  ||   |||   ||      || |   ||   || |   ||     ||||  |||            || |||| ||| || ||||||
-AGACGCATCTGCCGTTTGCCCTAGTGGATCTTGCAGGGTTATTGAAGTTCCAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAGgtttgcacattctttgaattgtttaatttcatcaaattccagaacttctacttatgctttatcatttgtgaaacaatttcatttactgagtgtgttgttatttgttcgttcag

upper sequence: GRMZM2G180155_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os12g03720.2 (Oryza sativa), 5'ss of exon 10
CCACCGCG-CTGCTGTATGCCCCAGTGGATCCTGCAGAGTCATTGAAGTTCCGGAGGTTGCATGTTGTCTCCAGCCAGTGATTAACATAATCCCATTACAGgtttgt---ttgtctaattaagcttgttctgtca---tctgtttttttttggtacagttcactgttcactgaacagattc------------tgctgtttttttttggttcag
    |||  |||| || ||||| |||||||| ||||| || ||||||||||| ||||| ||    |||||||||||||||||||||||||| || |||||||||||    |||| | | |    |  ||   |||   ||      || |   ||   || |   ||     ||||  |||            |  |||| ||| ||  |||||
-AGACGCATCTGCAGTTTGCCCTAGTGGATCTTGCAGGGTTATTGAAGTTCCAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAGgtttgcacattgtttgaattgtttaatttcatcaaattccagaacttctacttatgctttatcatttgtgaaacaatttcatttactgagtgtattgttatttgttccttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13381721|gb|BG458276.1|BG458276
EST:     CGGAGGTTGCATGTTGTCTCCAGCCAGTGATTAACATAATCCCATTACAG                         TTGCTCGCGTACAATCTGACTGTTCTCCAGGGATTCGATGTGGACCAACCA
genomic: CGGAGGTTGCATGTTGTCTCCAGCCAGTGATTAACATAATCCCATTACAGgtttgtttgt ... tttggttcagTTGCTCGCGTACAATCTGACTGTTCTCCAGGGATTCGATGTGGACCAACCA