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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGAAAGGGGCCTTCTCTGTTGATGCTGAAGGTACAACAGAGAGTGAGACACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAGgttatgaagcaagtgtctttacttgtgccctcatgactgcttattctcaaatttgacaatcagaaaaattatctccccatgatgaaccatgatgtccaca...

Basic information

species Zea mays
transcript GRMZM2G179429_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G179429_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os07g01320.1 (Oryza sativa), 5'ss of exon 5
ATGGAAAGGGGCCTTCTCTGTTGATGCTGAAGGTACAACAGAGAGTGAGACACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAGgttatgaagcaagtgtctttacttgtgccctcatgactgcttattctcaaatttg-------acaatcagaaaaattatctccccatgatgaacca-tgatgtccaca
||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||| || ||||||||||| |     |   | | |||       |  | |||  |     |||   ||||||       |  ||  || ||||||  | ||  || |  |||  | |||      
ATGGAAAGGAGCCTTCTCAGTTGATGCTGAAGGTACAACAGAGAGTGACACACAAGATGATGGCCAGGGTTTGCTCCACAATTTTGTAGAGTACATCAAGgt-actcctcttttttttttgtgaagacagtgatgtgt-tgcgttcaagaatttgtagacctattatttgacaaattaagtgcctctgctctacctcttatg------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50329493|gb|CO524619.1|CO524619
EST:     CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAG                         AAGCAGAAGTGTGTTCCCCTAG
genomic: CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAGgttatgaagc ... taaacttcagAAGCAGAAGTGTGTTCCCCTAG
EST: gi|31364129|gb|CD448484.1|CD448484
EST:     CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAG                         AAGCAGAAGTGTGTTCCCCTAGAGGACCTAGCTGCAGAGTTCAGGATGCGA
genomic: CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAGgttatgaagc ... taaacttcagAAGCAGAAGTGTGTTCCCCTAGAGGACCTAGCTGCAGAGTTCAGGATGCGA
EST: gi|60357983|gb|DN224956.1|DN224956
EST:     CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAG                         AAGCAGAAGTGTGTTCCCCTAGAGGACCTAGCTGCAGAGTTCAGGATGCGA
genomic: CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAGgttatgaagc ... taaacttcagAAGCAGAAGTGTGTTCCCCTAGAGGACCTAGCTGCAGAGTTCAGGATGCGA
EST: gi|76014913|gb|DT942083.1|DT942083
EST:     CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAG                         AAGCAGAAGTGTGTTCCCCTAGAGGACCTAGCTGCAGAGTTCAGGATGCGA
genomic: CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAGgttatgaagc ... taaacttcagAAGCAGAAGTGTGTTCCCCTAGAGGACCTAGCTGCAGAGTTCAGGATGCGA
EST: gi|76014912|gb|DT942082.1|DT942082
EST:     CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAG                         AAGCAGAAGTGTGTTCCCCTAGAGGACCTAGCTGCAGAGTTCAGGATGCGA
genomic: CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAGgttatgaagc ... taaacttcagAAGCAGAAGTGTGTTCCCCTAGAGGACCTAGCTGCAGAGTTCAGGATGCGA
EST: gi|32165071|gb|CD670389.1|CD670389
EST:     CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAG                         AAGCAGAAGTGTGTTCCCCTAGAGGACCTAGCTGCAGAGTTCAGGATGCGA
genomic: CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAGgttatgaagc ... taaacttcagAAGCAGAAGTGTGTTCCCCTAGAGGACCTAGCTGCAGAGTTCAGGATGCGA
EST: gi|148956262|gb|EC902060.2|EC902060
EST:     CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAG                         AAGCAGAAGTGTGTTCCCCTAGAGGACCTAGCTGCAGAGTTCAGGATGCCG
genomic: CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAGgttatgaagc ... taaacttcagAAGCAGAAGTGTGTTCCCCTAGAGGACCTAGCTGCAGAGTTCAGGATGC-G
EST: gi|91048409|gb|EB158827.1|EB158827
EST:     CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAG                         AAGCAGAAGTGTGTTCCCCTAGAGGACCTAGCTGCAGAGTTCAGGATGCGA
genomic: CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAGgttatgaagc ... taaacttcagAAGCAGAAGTGTGTTCCCCTAGAGGACCTAGCTGCAGAGTTCAGGATGCGA
EST: gi|31364620|gb|CD448975.1|CD448975
EST:     CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAG                         AAGCAGAAGTGTGTTCCCCTAGAGGACCTAGCTGCAGAGTTCAGGATGCGA
genomic: CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAGgttatgaagc ... taaacttcagAAGCAGAAGTGTGTTCCCCTAGAGGACCTAGCTGCAGAGTTCAGGATGCGA
EST: gi|78112542|gb|DV530936.1|DV530936
EST:     CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAG                         AAGCAAAAGTGTGTTCTCCCTAGAGGACCTACCTGCAGAGTTCAG
genomic: CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAGgttatgaagc ... taaacttcagAAGCAGAAGTGTGTTC-CCCTAGAGGACCTAGCTGCAGAGTTCAG
EST: gi|211469382|gb|FL187167.1|FL187167
EST:     CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGT-GAATACATCAAG                         AAGCAGAAGTGTGTTCCCCTAGAGGACCTAGCTGCAGAGTTCAGGATGCGA
genomic: CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAGgttatgaagc ... taaacttcagAAGCAGAAGTGTGTTCCCCTAGAGGACCTAGCTGCAGAGTTCAGGATGCGA
EST: gi|71307153|gb|DR789747.1|DR789747
EST:     CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAG                         AAGCAGAAGTGTGTTCCCCTAGAGGACCTAGCTGCAGAGTTCAGGATGCGA
genomic: CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAGgttatgaagc ... taaacttcagAAGCAGAAGTGTGTTCCCCTAGAGGACCTAGCTGCAGAGTTCAGGATGCGA
EST: gi|78112541|gb|DV530935.1|DV530935
EST:     CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAG                         AAGCAGAAGTGTGTTCCCCTAGAGGACCTAGCTGCAGAGTTCAGGATGCGA
genomic: CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAGgttatgaagc ... taaacttcagAAGCAGAAGTGTGTTCCCCTAGAGGACCTAGCTGCAGAGTTCAGGATGCGA
EST: gi|211427421|gb|FL445183.1|FL445183
EST:     CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATATATCAAG                         AAGCAGAAGTGTGTTCCCCTAGATGACCTAGCTGCAGAGTTCAGGATGCGA
genomic: CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAGgttatgaagc ... taaacttcagAAGCAGAAGTGTGTTCCCCTAGAGGACCTAGCTGCAGAGTTCAGGATGCGA
EST: gi|148932548|gb|EC876363.2|EC876363
EST:     CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAG                         AAGCAGAAGTGTGTTCCCCTAGAGGACCTAGCTGCAGAGTTCAGGATGCGA
genomic: CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAGgttatgaagc ... taaacttcagAAGCAGAAGTGTGTTCCCCTAGAGGACCTAGCTGCAGAGTTCAGGATGCGA
EST: gi|71773570|gb|DR971468.1|DR971468
EST:     CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAG                         AAGCAGAAGTGTGTTCCCCTAGAGGACCTAGCTGCAGAGTTCAGGATGCGA
genomic: CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAGgttatgaagc ... taaacttcagAAGCAGAAGTGTGTTCCCCTAGAGGACCTAGCTGCAGAGTTCAGGATGCGA
EST: gi|71757661|gb|DR955598.1|DR955598
EST:     CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAG                         AAGCAGAAGTGTGTTCCCCTAGAGGACCTAGCTGCAGAGTTCAGGATGCGA
genomic: CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAGgttatgaagc ... taaacttcagAAGCAGAAGTGTGTTCCCCTAGAGGACCTAGCTGCAGAGTTCAGGATGCGA
EST: gi|94472565|gb|EB701523.1|EB701523
EST:     CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAG                         AAGCAGAAGTGTGTTCCCCTAGAGGACCTAGCTGCAGAGTTCAGGATGCGA
genomic: CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAGgttatgaagc ... taaacttcagAAGCAGAAGTGTGTTCCCCTAGAGGACCTAGCTGCAGAGTTCAGGATGCGA
EST: gi|148958245|gb|EC904458.2|EC904458
EST:     CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAG                         AAGCAGAAGTGTGTTCCCCTAGAGGACCTAGCTGCAGAGTTCAGGATGCGA
genomic: CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAGgttatgaagc ... taaacttcagAAGCAGAAGTGTGTTCCCCTAGAGGACCTAGCTGCAGAGTTCAGGATGCGA
EST: gi|148959747|gb|EC905644.2|EC905644
EST:     CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAG                         AAGCAGAAGTGTGTTCCCCTAGAGGGAC-TAGCTGCAGAGTT
genomic: CACAAGACGATGGTCAGGGTTTGCTCCACAACTTTGTGGAATACATCAAGgttatgaagc ... taaacttcagAAGCAGAAGTGTGTTCCCCTAGAGG-ACCTAGCTGCAGAGTT