Sequence
atgc intronic sequence ATGC exonic sequenceCTATCAAAATCATTAGGGGCATTAAAAAGTACAGGGATGCTGCAATGATCGAAATTGGCATGCTCGAGCAGCTTGGTAAATATGATGAAAGTAGATCTAGgtgagtttgctggttcggttaacacccttctgtatgctttacattcataagattgcttgtatatataagctggtctattttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G179308_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os12g27520.4 (Oryza sativa), 5'ss of exon 4
CTATCAAAATCATTAGGGGCATTAAAAAGTACAGGGATGCTGCAATGATCGAAATTGGCATGCTCGAGCAGCTTGGTAAATATGATGAAAGTAGATCTAGgtgagtttgctggttcggtt-----------------aac-----acccttctgtatgctttacattcataagattgcttgtatatataagctggtctattttgcag
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CCATTAAGATCATCAGAGGCATTAAGAAGTACAGGGATGCTGCAATGATAGAAATTGGCATGCTCGAGCAGCTTGGTAAATATGAAAAAAGTAGATCCAGgtgagtcctatggttcacttttccgtttcccttaagtaactgttgatctatctgtgtgctttacttgcgcaatattgcttgtatatataagctggtctattttgcag
upper sequence: GRMZM2G179308_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os12g27520.4 (Oryza sativa), 5'ss of exon 4
CTATCAAAATCATTAGGGGCATTAAAAAGTACAGGGATGCTGCAATGATCGAAATTGGCATGCTCGAGCAGCTTGGTAAATATGATGAAAGTAGATCTAGgtgagtttgctggttcggtt-----------------aac-----acccttctgtatgctttacattcataagattgcttgtatatataagctggtctattttgcag
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CCATTAAGATCATCAGAGGCATTAAGAAGTACAGGGATGCTGCAATGATAGAAATTGGCATGCTCGAGCAGCTTGGTAAATATGAAAAAAGTAGATCCAGgtgagtcctatggttcacttttccgtttcccttaagtaactgttgatctatctgtgtgctttacttgcgcaatattgcttgtatatataagctggtctattttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71434755|gb|DR815805.1|DR815805EST: GAAATTGGCATGCTCGAGCAGCTTGGTAAATATGATGAAAGTAGATCTAG TTGTGTTCAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATT
genomic: GAAATTGGCATGCTCGAGCAGCTTGGTAAATATGATGAAAGTAGATCTAGgtgagtttgc ... tattttgcagTTGTGTTCAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTATCAAAATCATTAGGGGCATTAAAAAGTACAGGGATGCTGCAATGATCGAAATTGGCATGCTCGAGCAGCTTGGTAAATATGATGAAAGTAGATCTAGgtgagtttgctggttcggttaacacccttctgtatgctttacattcataagattgcttgtatatataagctggtctattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT