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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGTATATTCGATCAGGATTGAGAATATTAGTGTCAGAAAGCCTCCTAGTTGTGATGTAAAAATTACTGGGGTTGCTCATCCACATGATTTCAGGAAGgtacttagattaattgtctcacttgatctctagttttttgttgaaactaagttttggatctacttattcag

Basic information

species Zea mays
transcript GRMZM2G179281_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G179281_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os12g38480.1 (Oryza sativa), 5'ss of exon 3
TGGTGTATATTCGATCAGGATTGAGAATATTAGTGTCAGAAAGCCTCCTAGTTGTGATGTAAAAATTACTGGGGTTGCTCATCCACATGATTTCAGGAAGgtact--------tagattaattgtctcacttgatctctagttttttgttgaaactaagttttggatctactta-ttcag
|||| ||||||| |||||  ||||||| ||| ||||| |||||||| |||||  |||  |||| || |||||  ||  |||||||||||||||||||||||||||        |   |||  | ||||| |  ||||| |||||||   | |        ||  ||  | |||  |||||
TGGTATATATTCAATCAGATTTGAGAACATTGGTGTCCGAAAGCCTTCTAGTGATGACATAAAGATAACTGGAATTAGTCATCCACATGATTTCAGGAAGgtactaaacattttgatttatctatctcagtctatctcgagtttttgtctca--------ttcagacatgctttcttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50324483|gb|CO519609.1|CO519609
EST:     GTTGTGATGTAAAAATTACTGGGGTTGCTCATCCACATGATTTCAGGAAG                         GCCGTTGTAGTCCATCTTTTGAACACTAGGAATCAAAAAACATCATCGGAT
genomic: GTTGTGATGTAAAAATTACTGGGGTTGCTCATCCACATGATTTCAGGAAGgtacttagat ... acttattcagGCCGTTGTAGTCCATCTTTTGAACACTAGGAATCAAAAAACATCATCGGAT
EST: gi|74244789|gb|DT652703.1|DT652703
EST:     GTTGTGATGTAAAAATTACTGGGGTTGCTCATCCACATGATTTCAGGAAG                         GCCGTTGTAGTCCATCTTTTGAACACTAGGAATCAAAAAACATCATCGGAT
genomic: GTTGTGATGTAAAAATTACTGGGGTTGCTCATCCACATGATTTCAGGAAGgtacttagat ... acttattcagGCCGTTGTAGTCCATCTTTTGAACACTAGGAATCAAAAAACATCATCGGAT
EST: gi|50324484|gb|CO519610.1|CO519610
EST:     GTTGTGATGTAAAAATTACTGGGGTTGCTCATCCACATGATTTCAGGAAG                         GCCGTTGTAGTCCATCTTTTGAACACTAGGAATCAAAAAACATCATCGGAT
genomic: GTTGTGATGTAAAAATTACTGGGGTTGCTCATCCACATGATTTCAGGAAGgtacttagat ... acttattcagGCCGTTGTAGTCCATCTTTTGAACACTAGGAATCAAAAAACATCATCGGAT
EST: gi|71772785|gb|DR970710.1|DR970710
EST:     GTTGTGATGTAAAAATTACTGGGGTTGCTCATCCACATGATTTCAGGAAG                         GCCGTTGTAGTCCATCTTTTGAACACTAGGAATCAAAAAACATCATCGGAT
genomic: GTTGTGATGTAAAAATTACTGGGGTTGCTCATCCACATGATTTCAGGAAGgtacttagat ... acttattcagGCCGTTGTAGTCCATCTTTTGAACACTAGGAATCAAAAAACATCATCGGAT
EST: gi|50324921|gb|CO520047.1|CO520047
EST:     GTTGTGATGTAAAAATTACTGGGGTTGCTCATCCACATGATTTCAGGAAG                         GCCGTTGTAGTCCATCTTTTGAACACTAGGAATCAAAAAACATCATCGGAT
genomic: GTTGTGATGTAAAAATTACTGGGGTTGCTCATCCACATGATTTCAGGAAGgtacttagat ... acttattcagGCCGTTGTAGTCCATCTTTTGAACACTAGGAATCAAAAAACATCATCGGAT
EST: gi|50324920|gb|CO520046.1|CO520046
EST:     GTTGTGATGTAAAAATTACTGGGGTTGCTCATCCACATGATTTCAGGAAG                         GCCGTTGTAGTCCATCTTTTGAACACTAGGAATCAAAAAACATCATCGGAT
genomic: GTTGTGATGTAAAAATTACTGGGGTTGCTCATCCACATGATTTCAGGAAGgtacttagat ... acttattcagGCCGTTGTAGTCCATCTTTTGAACACTAGGAATCAAAAAACATCATCGGAT
EST: gi|74244788|gb|DT652702.1|DT652702
EST:     GTTGTGATGTAAAAATTACTGGGGTTGCTCATCCACATGATTTCAGGAAG                         GCCGTTGTAGTCCATCTTTTGAACACTAGGAATCAAAAAACATCATCGGAT
genomic: GTTGTGATGTAAAAATTACTGGGGTTGCTCATCCACATGATTTCAGGAAGgtacttagat ... acttattcagGCCGTTGTAGTCCATCTTTTGAACACTAGGAATCAAAAAACATCATCGGAT