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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTTAGAACACTCGGCACACCTAATGAGAAGATTTGGCCTGGCTATGCTAAATTACCAGGTGTGAAAGTAAATTTTGTTAAACAACCgtaagtgtctctaccatttatacttcagttgttgttttacaaagtgtcatttttgtgtgacaggatatcttttttttgttcttattgttag

Basic information

species Zea mays
transcript GRMZM2G179097_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G179097_T08 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os04g41100.6 (Oryza sativa), 5'ss of exon 5
ATTTTTAGAACACTCGGCACACCTAATGAGAAGATTTGGCCTGGCTATGCTAAATTACCAGGTGTGAAAGTAAATTTTGTTAAACAACCgtaagtgtctct---accatttatacttcagt-tgttgttttacaaagtgtc---atttttgtgtgacaggatatcttttttttgttcttattgttag
|| ||||||||||| ||||||||||| |||||||| |||||||||||||| ||||| || ||||| ||||| |||||||| |||||||||||||||||||    |  ||  |||| | |   ||||| | |    ||||||   ||     |||||    || ||| || |||  |||| |      
ATATTTAGAACACTTGGCACACCTAACGAGAAGATATGGCCTGGCTATGCCAAATTGCCGGGTGTAAAAGTCAATTTTGTCAAACAACCgtaagtgtctcctggataatgcatacctaatcgtgttggtctgatgagtgtctatatgccattgtgatgaaatttctgttcttttatcttgtcag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32847543|gb|CD987224.1|CD987224
EST:     CCTGGCTATGCTAAATTACCAGGTGTGAAAGTAAATTTTGTTAAACAACC                         GTATAATAGACTAAGGGATAAGTTCCCAGCCGCTTCTTTTTCTGGGCGACC
genomic: CCTGGCTATGCTAAATTACCAGGTGTGAAAGTAAATTTTGTTAAACAACCgtaagtgtct ... ttattgttagGTATAATAGACTAAGGGATAAGTTCCCAGCCGCTTCTTTTTCTGGGCGACC
EST: gi|31664323|gb|CD573048.1|CD573048
EST:     CCTGGCTATGCTAAATTACCAGGTGTGAAAGTAAATTTTGTTAAACAACC                         GTATAATAGACTAAGGGATAAGTTCCCAGCCGCTTCTTTTTCTGGGCGACC
genomic: CCTGGCTATGCTAAATTACCAGGTGTGAAAGTAAATTTTGTTAAACAACCgtaagtgtct ... ttattgttagGTATAATAGACTAAGGGATAAGTTCCCAGCCGCTTCTTTTTCTGGGCGACC
EST: gi|211055687|gb|FL451729.1|FL451729
EST:     CCTGGCTATGCTAAATTACCAGGTGTGAAAGTAAATTTTGTTAAACAACC                         GTATAATAGACTAAGGGATAAGTTCCCAGCCGCTTCTTTTTCTGGGCGACC
genomic: CCTGGCTATGCTAAATTACCAGGTGTGAAAGTAAATTTTGTTAAACAACCgtaagtgtct ... ttattgttagGTATAATAGACTAAGGGATAAGTTCCCAGCCGCTTCTTTTTCTGGGCGACC