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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCCCAGCATCAATCGTTCTGATCATATACTGCTTCATCTGTGTGTGGTTTGTGGGTGGTCTGTCTGTCTTCCATTTCTATCTCATGAGCACTAACCAGgttggtaccctgtcaacttttttaatatagttggttttacccgtaagcatattgctgataattggttagtttactcgtaagcatattgctaggaatttgtaattactctcatgtgggagcctctggcattgggtctgcccttttcctatcctttgcag

Basic information

species Zea mays
transcript GRMZM2G179002_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G179002_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os09g33450.2 (Oryza sativa), 5'ss of exon 5
GACCCCAGCATCAATCGTTCTGATCATATACTGCTTCATCTGTGTGTGGTTTGTGGGTGGTCTGTCTGTCTTCCATTTCTATCTCATGAGCACTAACCAGgttggtaccctgtcaacttttttaatatagttggttttacccgtaagcatattgctgataattggttagtttactcgtaagcatattgctaggaatttgtaattactctcatgtgggagcctctggcattgggtctgcccttttcctatcctttgcag
||| || |||||||| || |||||||| |||||||| || || |||||||| || ||||||||||||||||| |||||||| || |||||||| || |||||||||| ||| ||   ||||||  |  ||||   |||||   |||   | |     |||  |   |   ||  |   || | |  |  |    | ||||   ||                                                     
GACACCGGCATCAATTGTCCTGATCATCTACTGCTTTATTTGCGTGTGGTTCGTTGGTGGTCTGTCTGTCTTTCATTTCTACCTGATGAGCACCAATCAGgttggtatcctttcggttttttt--ttaagtt---tttacaaataaatctttcaagcatagcttaatgacttgtt---aaccgtccttttctttacttgtgtgtatcag-------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60342809|gb|DN209782.1|DN209782
EST:     TTGTGGGTGGTCTGTCTGTCTTCCATTTCTATCTCATGAGCACTAACCAG                         ACAACCTATGAGAACTTCAGATACCGCTATGATCGGCGGGACAATCCGTAC
genomic: TTGTGGGTGGTCTGTCTGTCTTCCATTTCTATCTCATGAGCACTAACCAGgttggtaccc ... tcctttgcagACAACCTATGAGAACTTCAGATACCGCTATGATCGGCGGGACAATCCGTAC
EST: gi|211248421|gb|FL442236.1|FL442236
EST:     TCTATCTCATGAGCACTAACCAG                         ACAACCTATGAGAACTTCAGATACCGCTATGATCGGCGGGACAATCCGTAC
genomic: TCTATCTCATGAGCACTAACCAGgttggtaccc ... tcctttgcagACAACCTATGAGAACTTCAGATACCGCTATGATCGGCGGGACAATCCGTAC